Literature DB >> 25608779

Repeat instability during DNA repair: Insights from model systems.

Karen Usdin1, Nealia C M House, Catherine H Freudenreich.   

Abstract

The expansion of repeated sequences is the cause of over 30 inherited genetic diseases, including Huntington disease, myotonic dystrophy (types 1 and 2), fragile X syndrome, many spinocerebellar ataxias, and some cases of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Repeat expansions are dynamic, and disease inheritance and progression are influenced by the size and the rate of expansion. Thus, an understanding of the various cellular mechanisms that cooperate to control or promote repeat expansions is of interest to human health. In addition, the study of repeat expansion and contraction mechanisms has provided insight into how repair pathways operate in the context of structure-forming DNA, as well as insights into non-canonical roles for repair proteins. Here we review the mechanisms of repeat instability, with a special emphasis on the knowledge gained from the various model systems that have been developed to study this topic. We cover the repair pathways and proteins that operate to maintain genome stability, or in some cases cause instability, and the cross-talk and interactions between them.

Entities:  

Keywords:  Chromosome fragility; DNA damage checkpoint; DNA structure; recombination; repair; replication; structure-specific helicases; trinucleotide repeat expansion

Mesh:

Substances:

Year:  2015        PMID: 25608779      PMCID: PMC4454471          DOI: 10.3109/10409238.2014.999192

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  306 in total

1.  Fen1 does not control somatic hypermutability of the (CTG)(n)*(CAG)(n) repeat in a knock-in mouse model for DM1.

Authors:  Walther J A A van den Broek; Marcel R Nelen; Godfried W van der Heijden; Derick G Wansink; Bé Wieringa
Journal:  FEBS Lett       Date:  2006-09-05       Impact factor: 4.124

2.  Coordination of dual incision and repair synthesis in human nucleotide excision repair.

Authors:  Lidija Staresincic; Adebanke F Fagbemi; Jacqueline H Enzlin; Audrey M Gourdin; Nils Wijgers; Isabelle Dunand-Sauthier; Giuseppina Giglia-Mari; Stuart G Clarkson; Wim Vermeulen; Orlando D Schärer
Journal:  EMBO J       Date:  2009-03-12       Impact factor: 11.598

Review 3.  DNA sequences that interfere with transcription: implications for genome function and stability.

Authors:  Boris P Belotserkovskii; Sergei M Mirkin; Philip C Hanawalt
Journal:  Chem Rev       Date:  2013-08-23       Impact factor: 60.622

4.  Double-strand break repair can lead to high frequencies of deletions within short CAG/CTG trinucleotide repeats.

Authors:  G F Richard; B Dujon; J E Haber
Journal:  Mol Gen Genet       Date:  1999-06

5.  Solution structures of the Huntington's disease DNA triplets, (CAG)n.

Authors:  S V Mariappan; L A Silks; X Chen; P A Springer; R Wu; R K Moyzis; E M Bradbury; A E Garcia; G Gupta
Journal:  J Biomol Struct Dyn       Date:  1998-02

6.  Instability of highly expanded CAG repeats in mice transgenic for the Huntington's disease mutation.

Authors:  L Mangiarini; K Sathasivam; A Mahal; R Mott; M Seller; G P Bates
Journal:  Nat Genet       Date:  1997-02       Impact factor: 38.330

Review 7.  Mre11-Rad50-Nbs1 is a keystone complex connecting DNA repair machinery, double-strand break signaling, and the chromatin template.

Authors:  R Scott Williams; Jessica S Williams; John A Tainer
Journal:  Biochem Cell Biol       Date:  2007-08       Impact factor: 3.626

8.  Requirement of RAD52 group genes for postreplication repair of UV-damaged DNA in Saccharomyces cerevisiae.

Authors:  Venkateswarlu Gangavarapu; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2007-09-04       Impact factor: 4.272

9.  AGG interruptions within the maternal FMR1 gene reduce the risk of offspring with fragile X syndrome.

Authors:  Carolyn M Yrigollen; Blythe Durbin-Johnson; Louise Gane; David L Nelson; Randi Hagerman; Paul J Hagerman; Flora Tassone
Journal:  Genet Med       Date:  2012-04-12       Impact factor: 8.822

10.  Tissue-dependent regulation of RNAP II dynamics: the missing link between transcription and trinucleotide repeat instability in diseases?

Authors:  Agathi-Vasiliki Goula; Richard Festenstein; Karine Merienne
Journal:  Transcription       Date:  2013-08-02
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  72 in total

1.  Evidence for chromosome fragility at the frataxin locus in Friedreich ataxia.

Authors:  Daman Kumari; Bruce Hayward; Asako J Nakamura; William M Bonner; Karen Usdin
Journal:  Mutat Res       Date:  2015-08-30       Impact factor: 2.433

Review 2.  The chicken or the egg: mitochondrial dysfunction as a cause or consequence of toxicity in Huntington's disease.

Authors:  Aris A Polyzos; Cynthia T McMurray
Journal:  Mech Ageing Dev       Date:  2016-09-12       Impact factor: 5.432

Review 3.  The role of fork stalling and DNA structures in causing chromosome fragility.

Authors:  Simran Kaushal; Catherine H Freudenreich
Journal:  Genes Chromosomes Cancer       Date:  2019-01-29       Impact factor: 5.006

Review 4.  The Repeat Expansion Diseases: The dark side of DNA repair.

Authors:  Xiao-Nan Zhao; Karen Usdin
Journal:  DNA Repair (Amst)       Date:  2015-04-30

Review 5.  Modifiers of CAG/CTG Repeat Instability: Insights from Mammalian Models.

Authors:  Vanessa C Wheeler; Vincent Dion
Journal:  J Huntingtons Dis       Date:  2021

Review 6.  The impact of replication stress on replication dynamics and DNA damage in vertebrate cells.

Authors:  Hervé Técher; Stéphane Koundrioukoff; Alain Nicolas; Michelle Debatisse
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

Review 7.  Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Authors:  Hannah L Klein; Giedrė Bačinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M Fitzgerald; Belén Gómez-González; Sharik R Khan; Sandeep Kumar; Bryan A Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J Polleys; Christopher D Putnam; Elina A Radchenko; Anissia Ait Saada; Cynthia J Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andrés Aguilera; Juan Lucas Argueso; Catherine H Freudenreich; Susan M Gasser; Dmitry A Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C King; Richard D Kolodner; Andrei Kuzminov; Sarah Ae Lambert; Sang Eun Lee; Kyle M Miller; Sergei M Mirkin; Thomas D Petes; Susan M Rosenberg; Rodney Rothstein; Lorraine S Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova
Journal:  Microb Cell       Date:  2019-01-07

8.  Methods to Study Trinucleotide Repeat Instability Induced by DNA Damage and Repair.

Authors:  Yanhao Lai; Ruipeng Lei; Yaou Ren; Yuan Liu
Journal:  Methods Mol Biol       Date:  2019

9.  Atypical structures of GAA/TTC trinucleotide repeats underlying Friedreich's ataxia: DNA triplexes and RNA/DNA hybrids.

Authors:  Jiahui Zhang; Ashkan Fakharzadeh; Feng Pan; Christopher Roland; Celeste Sagui
Journal:  Nucleic Acids Res       Date:  2020-09-25       Impact factor: 16.971

10.  A Defective mRNA Cleavage and Polyadenylation Complex Facilitates Expansions of Transcribed (GAA)n Repeats Associated with Friedreich's Ataxia.

Authors:  Ryan J McGinty; Franco Puleo; Anna Y Aksenova; Julia A Hisey; Alexander A Shishkin; Erika L Pearson; Eric T Wang; David E Housman; Claire Moore; Sergei M Mirkin
Journal:  Cell Rep       Date:  2017-09-05       Impact factor: 9.423

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