Literature DB >> 28877480

A Defective mRNA Cleavage and Polyadenylation Complex Facilitates Expansions of Transcribed (GAA)n Repeats Associated with Friedreich's Ataxia.

Ryan J McGinty1, Franco Puleo2, Anna Y Aksenova3, Julia A Hisey1, Alexander A Shishkin4, Erika L Pearson2, Eric T Wang5, David E Housman6, Claire Moore2, Sergei M Mirkin7.   

Abstract

Expansions of microsatellite repeats are responsible for numerous hereditary diseases in humans, including myotonic dystrophy and Friedreich's ataxia. Whereas the length of an expandable repeat is the main factor determining disease inheritance, recent data point to genomic trans modifiers that can impact the likelihood of expansions and disease progression. Detection of these modifiers may lead to understanding and treating repeat expansion diseases. Here, we describe a method for the rapid, genome-wide identification of trans modifiers for repeat expansion in a yeast experimental system. Using this method, we found that missense mutations in the endoribonuclease subunit (Ysh1) of the mRNA cleavage and polyadenylation complex dramatically increase the rate of (GAA)n repeat expansions but only when they are actively transcribed. These expansions correlate with slower transcription elongation caused by the ysh1 mutation. These results reveal an interplay between RNA processing and repeat-mediated genome instability, confirming the validity of our approach.
Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA double-strand breaks; Friedreich’s ataxia; RNA polyadenylation; RNA processing; genetic screen; genome instability; repeat expansion; trans-modifiers of repeat expansions; transcription-replication conflicts; whole-genome sequencing

Mesh:

Substances:

Year:  2017        PMID: 28877480      PMCID: PMC5658003          DOI: 10.1016/j.celrep.2017.08.051

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  76 in total

1.  A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors.

Authors:  Cristina Tous; Ana G Rondón; María García-Rubio; Cristina González-Aguilera; Rosa Luna; Andrés Aguilera
Journal:  EMBO J       Date:  2011-04-08       Impact factor: 11.598

2.  A polymorphism in the MSH3 mismatch repair gene is associated with the levels of somatic instability of the expanded CTG repeat in the blood DNA of myotonic dystrophy type 1 patients.

Authors:  Fernando Morales; Melissa Vásquez; Carolina Santamaría; Patricia Cuenca; Eyleen Corrales; Darren G Monckton
Journal:  DNA Repair (Amst)       Date:  2016-03-08

3.  A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes.

Authors:  Carsten Janke; Maria M Magiera; Nicole Rathfelder; Christof Taxis; Simone Reber; Hiromi Maekawa; Alexandra Moreno-Borchart; Georg Doenges; Etienne Schwob; Elmar Schiebel; Michael Knop
Journal:  Yeast       Date:  2004-08       Impact factor: 3.239

4.  Identification of Genetic Factors that Modify Clinical Onset of Huntington's Disease.

Authors: 
Journal:  Cell       Date:  2015-07-30       Impact factor: 41.582

Review 5.  Transcription destabilizes triplet repeats.

Authors:  Yunfu Lin; Leroy Hubert; John H Wilson
Journal:  Mol Carcinog       Date:  2009-04       Impact factor: 4.784

Review 6.  The balancing act of DNA repeat expansions.

Authors:  Jane C Kim; Sergei M Mirkin
Journal:  Curr Opin Genet Dev       Date:  2013-05-29       Impact factor: 5.578

7.  Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats.

Authors:  Kaalak Reddy; Mandy Tam; Richard P Bowater; Miriam Barber; Matthew Tomlinson; Kerrie Nichol Edamura; Yuh-Hwa Wang; Christopher E Pearson
Journal:  Nucleic Acids Res       Date:  2010-11-04       Impact factor: 16.971

8.  Friedreich's ataxia--a case of aberrant transcription termination?

Authors:  Jill Sergesketter Butler; Marek Napierala
Journal:  Transcription       Date:  2015-04-01

Review 9.  Out of balance: R-loops in human disease.

Authors:  Matthias Groh; Natalia Gromak
Journal:  PLoS Genet       Date:  2014-09-18       Impact factor: 5.917

10.  Genome-wide mapping of yeast RNA polymerase II termination.

Authors:  Paul Schaughency; Jonathan Merran; Jeffry L Corden
Journal:  PLoS Genet       Date:  2014-10-09       Impact factor: 5.917

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  11 in total

Review 1.  Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Authors:  Hannah L Klein; Giedrė Bačinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M Fitzgerald; Belén Gómez-González; Sharik R Khan; Sandeep Kumar; Bryan A Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J Polleys; Christopher D Putnam; Elina A Radchenko; Anissia Ait Saada; Cynthia J Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andrés Aguilera; Juan Lucas Argueso; Catherine H Freudenreich; Susan M Gasser; Dmitry A Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C King; Richard D Kolodner; Andrei Kuzminov; Sarah Ae Lambert; Sang Eun Lee; Kyle M Miller; Sergei M Mirkin; Thomas D Petes; Susan M Rosenberg; Rodney Rothstein; Lorraine S Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova
Journal:  Microb Cell       Date:  2019-01-07

Review 2.  R-loops: targets for nuclease cleavage and repeat instability.

Authors:  Catherine H Freudenreich
Journal:  Curr Genet       Date:  2018-01-11       Impact factor: 3.886

Review 3.  On the wrong DNA track: Molecular mechanisms of repeat-mediated genome instability.

Authors:  Alexandra N Khristich; Sergei M Mirkin
Journal:  J Biol Chem       Date:  2020-02-14       Impact factor: 5.157

Review 4.  Cis- and Trans-Modifiers of Repeat Expansions: Blending Model Systems with Human Genetics.

Authors:  Ryan J McGinty; Sergei M Mirkin
Journal:  Trends Genet       Date:  2018-03-19       Impact factor: 11.639

5.  Rad9-mediated checkpoint activation is responsible for elevated expansions of GAA repeats in CST-deficient yeast.

Authors:  Ekaterina Spivakovsky-Gonzalez; Erica J Polleys; Chiara Masnovo; Jorge Cebrian; Adrian M Molina-Vargas; Catherine H Freudenreich; Sergei M Mirkin
Journal:  Genetics       Date:  2021-10-02       Impact factor: 4.402

Review 6.  Connections between 3' end processing and DNA damage response: Ten years later.

Authors:  Michael Robert Murphy; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-10-28       Impact factor: 9.957

7.  Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1.

Authors:  Erika L Pearson; Joel H Graber; Susan D Lee; Kristoph S Naggert; Claire L Moore
Journal:  Cell Rep       Date:  2019-02-12       Impact factor: 9.423

Review 8.  Emerging Roles of RNA 3'-end Cleavage and Polyadenylation in Pathogenesis, Diagnosis and Therapy of Human Disorders.

Authors:  Jamie Nourse; Stefano Spada; Sven Danckwardt
Journal:  Biomolecules       Date:  2020-06-17

9.  Large-scale contractions of Friedreich's ataxia GAA repeats in yeast occur during DNA replication due to their triplex-forming ability.

Authors:  Alexandra N Khristich; Jillian F Armenia; Robert M Matera; Anna A Kolchinski; Sergei M Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

10.  Replication-independent instability of Friedreich's ataxia GAA repeats during chronological aging.

Authors:  Alexander J Neil; Julia A Hisey; Ishtiaque Quasem; Ryan J McGinty; Marcin Hitczenko; Alexandra N Khristich; Sergei M Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

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