Literature DB >> 19279666

Coordination of dual incision and repair synthesis in human nucleotide excision repair.

Lidija Staresincic1, Adebanke F Fagbemi, Jacqueline H Enzlin, Audrey M Gourdin, Nils Wijgers, Isabelle Dunand-Sauthier, Giuseppina Giglia-Mari, Stuart G Clarkson, Wim Vermeulen, Orlando D Schärer.   

Abstract

Nucleotide excision repair (NER) requires the coordinated sequential assembly and actions of the involved proteins at sites of DNA damage. Following damage recognition, dual incision 5' to the lesion by ERCC1-XPF and 3' to the lesion by XPG leads to the removal of a lesion-containing oligonucleotide of about 30 nucleotides. The resulting single-stranded DNA (ssDNA) gap on the undamaged strand is filled in by DNA repair synthesis. Here, we have asked how dual incision and repair synthesis are coordinated in human cells to avoid the exposure of potentially harmful ssDNA intermediates. Using catalytically inactive mutants of ERCC1-XPF and XPG, we show that the 5' incision by ERCC1-XPF precedes the 3' incision by XPG and that the initiation of repair synthesis does not require the catalytic activity of XPG. We propose that a defined order of dual incision and repair synthesis exists in human cells in the form of a 'cut-patch-cut-patch' mechanism. This mechanism may aid the smooth progression through the NER pathway and contribute to genome integrity.

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Year:  2009        PMID: 19279666      PMCID: PMC2683701          DOI: 10.1038/emboj.2009.49

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  54 in total

1.  Dual-incision assays for nucleotide excision repair using DNA with a lesion at a specific site.

Authors:  M K Shivji; J G Moggs; I Kuraoka; R D Wood
Journal:  Methods Mol Biol       Date:  1999

2.  Assay for nucleotide excision repair protein activity using fractionated cell extracts and UV-damaged plasmid DNA.

Authors:  M Biggerstaff; R D Wood
Journal:  Methods Mol Biol       Date:  1999

Review 3.  Molecular mechanism of nucleotide excision repair.

Authors:  W L de Laat; N G Jaspers; J H Hoeijmakers
Journal:  Genes Dev       Date:  1999-04-01       Impact factor: 11.361

4.  Definition of a short region of XPG necessary for TFIIH interaction and stable recruitment to sites of UV damage.

Authors:  Fabrizio Thorel; Angelos Constantinou; Isabelle Dunand-Sauthier; Thierry Nouspikel; Philippe Lalle; Anja Raams; Nicolaas G J Jaspers; Wim Vermeulen; Mahmud K K Shivji; Richard D Wood; Stuart G Clarkson
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

5.  The spacer region of XPG mediates recruitment to nucleotide excision repair complexes and determines substrate specificity.

Authors:  Isabelle Dunand-Sauthier; Marcel Hohl; Fabrizio Thorel; Pascale Jaquier-Gubler; Stuart G Clarkson; Orlando D Schärer
Journal:  J Biol Chem       Date:  2004-12-07       Impact factor: 5.157

6.  Assembly, subunit composition, and footprint of human DNA repair excision nuclease.

Authors:  M Wakasugi; A Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

7.  Mechanism of open complex and dual incision formation by human nucleotide excision repair factors.

Authors:  E Evans; J G Moggs; J R Hwang; J M Egly; R D Wood
Journal:  EMBO J       Date:  1997-11-03       Impact factor: 11.598

8.  The non-catalytic function of XPG protein during dual incision in human nucleotide excision repair.

Authors:  M Wakasugi; J T Reardon; A Sancar
Journal:  J Biol Chem       Date:  1997-06-20       Impact factor: 5.157

9.  Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7.

Authors:  F Tirode; D Busso; F Coin; J M Egly
Journal:  Mol Cell       Date:  1999-01       Impact factor: 17.970

10.  Characterization of reaction intermediates of human excision repair nuclease.

Authors:  D Mu; M Wakasugi; D S Hsu; A Sancar
Journal:  J Biol Chem       Date:  1997-11-14       Impact factor: 5.157

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  112 in total

1.  Multiple DNA binding domains mediate the function of the ERCC1-XPF protein in nucleotide excision repair.

Authors:  Yan Su; Barbara Orelli; Advaitha Madireddy; Laura J Niedernhofer; Orlando D Schärer
Journal:  J Biol Chem       Date:  2012-04-30       Impact factor: 5.157

2.  Induction of a G1-S checkpoint in fission yeast.

Authors:  Cathrine A Bøe; Marit Krohn; Gro Elise Rødland; Christoph Capiaghi; Olivier Maillard; Fritz Thoma; Erik Boye; Beáta Grallert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

3.  Replication factor C recruits DNA polymerase delta to sites of nucleotide excision repair but is not required for PCNA recruitment.

Authors:  René M Overmeer; Audrey M Gourdin; Ambra Giglia-Mari; Hanneke Kool; Adriaan B Houtsmuller; Gregg Siegal; Maria I Fousteri; Leon H F Mullenders; Wim Vermeulen
Journal:  Mol Cell Biol       Date:  2010-08-16       Impact factor: 4.272

4.  Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily.

Authors:  Susan E Tsutakawa; Scott Classen; Brian R Chapados; Andrew S Arvai; L David Finger; Grant Guenther; Christopher G Tomlinson; Peter Thompson; Altaf H Sarker; Binghui Shen; Priscilla K Cooper; Jane A Grasby; John A Tainer
Journal:  Cell       Date:  2011-04-15       Impact factor: 41.582

Review 5.  TFIIH: when transcription met DNA repair.

Authors:  Emmanuel Compe; Jean-Marc Egly
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-10       Impact factor: 94.444

6.  Homologous recombination rescues ssDNA gaps generated by nucleotide excision repair and reduced translesion DNA synthesis in yeast G2 cells.

Authors:  Wenjian Ma; James W Westmoreland; Michael A Resnick
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

Review 7.  Nucleotide excision repair in eukaryotes.

Authors:  Orlando D Schärer
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

8.  Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates.

Authors:  Norie Sugitani; Markus W Voehler; Michelle S Roh; Agnieszka M Topolska-Woś; Walter J Chazin
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

9.  Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair.

Authors:  Chia-Lung Li; Filip M Golebiowski; Yuki Onishi; Nadine L Samara; Kaoru Sugasawa; Wei Yang
Journal:  Mol Cell       Date:  2015-09-17       Impact factor: 17.970

Review 10.  Nucleotide Excision Repair: Finely Tuned Molecular Orchestra of Early Pre-incision Events.

Authors:  Qianzheng Zhu; Altaf A Wani
Journal:  Photochem Photobiol       Date:  2016-11-17       Impact factor: 3.421

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