Literature DB >> 25594181

Conformational changes of elongation factor G on the ribosome during tRNA translocation.

Jinzhong Lin1, Matthieu G Gagnon2, David Bulkley3, Thomas A Steitz4.   

Abstract

The universally conserved GTPase elongation factor G (EF-G) catalyzes the translocation of tRNA and mRNA on the ribosome after peptide bond formation. Despite numerous studies suggesting that EF-G undergoes extensive conformational rearrangements during translocation, high-resolution structures exist for essentially only one conformation of EF-G in complex with the ribosome. Here, we report four atomic-resolution crystal structures of EF-G bound to the ribosome programmed in the pre- and posttranslocational states and to the ribosome trapped by the antibiotic dityromycin. We observe a previously unseen conformation of EF-G in the pretranslocation complex, which is independently captured by dityromycin on the ribosome. Our structures provide insights into the conformational space that EF-G samples on the ribosome and reveal that tRNA translocation on the ribosome is facilitated by a structural transition of EF-G from a compact to an elongated conformation, which can be prevented by the antibiotic dityromycin.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25594181      PMCID: PMC4297320          DOI: 10.1016/j.cell.2014.11.049

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

1.  Interactions of translational factor EF-G with the bacterial ribosome before and after mRNA translocation.

Authors:  Kevin S Wilson; Roxana Nechifor
Journal:  J Mol Biol       Date:  2004-03-12       Impact factor: 5.469

2.  The conformational properties of elongation factor G and the mechanism of translocation.

Authors:  J Czworkowski; P B Moore
Journal:  Biochemistry       Date:  1997-08-19       Impact factor: 3.162

3.  Single-molecule structural dynamics of EF-G--ribosome interaction during translocation.

Authors:  Yuhong Wang; Haiou Qin; Rama D Kudaravalli; Stanislas V Kirillov; Graham T Dempsey; Dongli Pan; Barry S Cooperman; Yale E Goldman
Journal:  Biochemistry       Date:  2007-08-30       Impact factor: 3.162

4.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

5.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

6.  Following movement of domain IV of elongation factor G during ribosomal translocation.

Authors:  Enea Salsi; Elie Farah; Jillian Dann; Dmitri N Ermolenko
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

7.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

8.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

9.  Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome.

Authors:  Gregor Blaha; Robin E Stanley; Thomas A Steitz
Journal:  Science       Date:  2009-08-21       Impact factor: 47.728

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  60 in total

1.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

2.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 3.  The translation elongation cycle-capturing multiple states by cryo-electron microscopy.

Authors:  Joachim Frank
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 4.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 5.  Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Authors:  Stefan Arenz; Daniel N Wilson
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

6.  Global reprogramming of virulence and antibiotic resistance in Pseudomonas aeruginosa by a single nucleotide polymorphism in elongation factor, fusA1.

Authors:  Eve A Maunders; Rory C Triniman; Joshua Western; Taufiq Rahman; Martin Welch
Journal:  J Biol Chem       Date:  2020-09-17       Impact factor: 5.157

Review 7.  On elongation factor eEFSec, its role and mechanism during selenium incorporation into nascent selenoproteins.

Authors:  Miljan Simonović; Anupama K Puppala
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-03-17       Impact factor: 3.770

8.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

9.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

10.  EF-G Activation by Phosphate Analogs.

Authors:  Enea Salsi; Elie Farah; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2016-04-08       Impact factor: 5.469

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