Literature DB >> 27481773

Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Stefan Arenz1, Daniel N Wilson2.   

Abstract

Protein synthesis occurs on macromolecular machines, called ribosomes. Bacterial ribosomes and the translational machinery represent one of the major targets for antibiotics in the cell. Therefore, structural and biochemical investigations into ribosome-targeting antibiotics provide not only insight into the mechanism of action and resistance of antibiotics, but also insight into the fundamental process of protein synthesis. This review summarizes the recent advances in our understanding of protein synthesis, particularly with respect to X-ray and cryoelectron microscopy (cryo-EM) structures of ribosome complexes, and highlights the different steps of translation that are targeted by the diverse array of known antibiotics. Such findings will be important for the ongoing development of novel and improved antimicrobial agents to combat the rapid emergence of multidrug resistant pathogenic bacteria.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2016        PMID: 27481773      PMCID: PMC5008061          DOI: 10.1101/cshperspect.a025361

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  109 in total

1.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits.

Authors:  Chandana Barat; Partha P Datta; V Samuel Raj; Manjuli R Sharma; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2007-07-20       Impact factor: 17.970

3.  The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.

Authors:  Frank Schluenzen; Chie Takemoto; Daniel N Wilson; Tatsuya Kaminishi; Joerg M Harms; Kyoko Hanawa-Suetsugu; Witold Szaflarski; Masahito Kawazoe; Mikako Shirouzu; Mikako Shirouzo; Knud H Nierhaus; Shigeyuki Yokoyama; Paola Fucini
Journal:  Nat Struct Mol Biol       Date:  2006-09-24       Impact factor: 15.369

Review 4.  Macrolide antibiotics in the ribosome exit tunnel: species-specific binding and action.

Authors:  Krishna Kannan; Alexander S Mankin
Journal:  Ann N Y Acad Sci       Date:  2011-12       Impact factor: 5.691

5.  Allosteric control of the ribosome by small-molecule antibiotics.

Authors:  Leyi Wang; Arto Pulk; Michael R Wasserman; Michael B Feldman; Roger B Altman; Jamie H Doudna Cate; Scott C Blanchard
Journal:  Nat Struct Mol Biol       Date:  2012-08-19       Impact factor: 15.369

6.  Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.

Authors:  Maria A Borovinskaya; Raj D Pai; Wen Zhang; Barbara S Schuwirth; James M Holton; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H Doudna Cate
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

7.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

Review 8.  A structural view on the mechanism of the ribosome-catalyzed peptide bond formation.

Authors:  Miljan Simonović; Thomas A Steitz
Journal:  Biochim Biophys Acta       Date:  2009-07-09

9.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

10.  The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli.

Authors:  Patricia Julián; Pohl Milon; Xabier Agirrezabala; Gorka Lasso; David Gil; Marina V Rodnina; Mikel Valle
Journal:  PLoS Biol       Date:  2011-07-05       Impact factor: 8.029

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  25 in total

1.  Characterization of a Citrulline 4-Hydroxylase from Nonribosomal Peptide GE81112 Biosynthesis and Engineering of Its Substrate Specificity for the Chemoenzymatic Synthesis of Enduracididine.

Authors:  Christian R Zwick; Max B Sosa; Hans Renata
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-11       Impact factor: 15.336

Review 2.  Ribosome protection by ABC-F proteins-Molecular mechanism and potential drug design.

Authors:  Rya Ero; Veerendra Kumar; Weixin Su; Yong-Gui Gao
Journal:  Protein Sci       Date:  2019-03-04       Impact factor: 6.725

3.  Exploiting evolutionary trade-offs for posttreatment management of drug-resistant populations.

Authors:  Sergey V Melnikov; David L Stevens; Xian Fu; Hui Si Kwok; Jin-Tao Zhang; Yue Shen; Jeffery Sabina; Kevin Lee; Harry Lee; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-13       Impact factor: 11.205

Review 4.  Comparison of Antibiotic Resistance Mechanisms in Antibiotic-Producing and Pathogenic Bacteria.

Authors:  Hiroshi Ogawara
Journal:  Molecules       Date:  2019-09-21       Impact factor: 4.411

Review 5.  Resistance to Macrolide Antibiotics in Public Health Pathogens.

Authors:  Corey Fyfe; Trudy H Grossman; Kathy Kerstein; Joyce Sutcliffe
Journal:  Cold Spring Harb Perspect Med       Date:  2016-10-03       Impact factor: 6.915

Review 6.  Antibacterial fatty acids: An update of possible mechanisms of action and implications in the development of the next-generation of antibacterial agents.

Authors:  Giancarlo Casillas-Vargas; Carlimar Ocasio-Malavé; Solymar Medina; Christian Morales-Guzmán; René García Del Valle; Néstor M Carballeira; David J Sanabria-Ríos
Journal:  Prog Lipid Res       Date:  2021-02-09       Impact factor: 16.195

Review 7.  Ribosome-Targeting Antibiotics: Modes of Action, Mechanisms of Resistance, and Implications for Drug Design.

Authors:  Jinzhong Lin; Dejian Zhou; Thomas A Steitz; Yury S Polikanov; Matthieu G Gagnon
Journal:  Annu Rev Biochem       Date:  2018-03-23       Impact factor: 27.258

8.  Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature.

Authors:  Mary E O'Sullivan; Frédéric Poitevin; Raymond G Sierra; Cornelius Gati; E Han Dao; Yashas Rao; Fulya Aksit; Halilibrahim Ciftci; Nicholas Corsepius; Robert Greenhouse; Brandon Hayes; Mark S Hunter; Mengling Liang; Alex McGurk; Paul Mbgam; Trevor Obrinsky; Fátima Pardo-Avila; Matthew H Seaberg; Alan G Cheng; Anthony J Ricci; Hasan DeMirci
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

9.  Antibiotic resistance ABCF proteins reset the peptidyl transferase centre of the ribosome to counter translational arrest.

Authors:  Victoriia Murina; Marje Kasari; Vasili Hauryliuk; Gemma C Atkinson
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

Review 10.  The Mechanisms of Action of Ribosome-Targeting Peptide Antibiotics.

Authors:  Yury S Polikanov; Nikolay A Aleksashin; Bertrand Beckert; Daniel N Wilson
Journal:  Front Mol Biosci       Date:  2018-05-14
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