Literature DB >> 29218629

Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.

Shun Hirota1, Ying-Wu Lin2.   

Abstract

Noncovalent weak interactions [hydrophobic interaction and hydrogen (H)-bond] play crucial roles in controlling the functions of biomolecules, and thus have been used to design artificial metalloproteins/metalloenzymes during the past few decades. In this review, we focus on the recent progresses in protein design by tuning the noncovalent interactions, including hydrophobic and H-bonding interactions. The topics include redesign and reuse of the heme pocket and other protein scaffolds, design of the heme protein interface, and de novo design of metalloproteins. The informations not only give insights into the metalloenzyme reaction mechanisms but also provide new reactions for future applications.

Entities:  

Keywords:  Hydrogen bond; Hydrophobic interaction; Metalloenzyme; Metalloprotein; Protein design

Mesh:

Substances:

Year:  2017        PMID: 29218629     DOI: 10.1007/s00775-017-1506-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  124 in total

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Authors:  Maximilian Ccjc Ebert; Joelle N Pelletier
Journal:  Curr Opin Chem Biol       Date:  2017-02-21       Impact factor: 8.822

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Journal:  Angew Chem Int Ed Engl       Date:  2013-05-06       Impact factor: 15.336

Review 3.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

Review 4.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

5.  Gram-Scale Synthesis of Chiral Cyclopropane-Containing Drugs and Drug Precursors with Engineered Myoglobin Catalysts Featuring Complementary Stereoselectivity.

Authors:  Priyanka Bajaj; Gopeekrishnan Sreenilayam; Vikas Tyagi; Rudi Fasan
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-25       Impact factor: 15.336

6.  Directed evolution of cytochrome c for carbon-silicon bond formation: Bringing silicon to life.

Authors:  S B Jennifer Kan; Russell D Lewis; Kai Chen; Frances H Arnold
Journal:  Science       Date:  2016-11-25       Impact factor: 47.728

7.  Rational design of heterodimeric protein using domain swapping for myoglobin.

Authors:  Ying-Wu Lin; Satoshi Nagao; Mohan Zhang; Yasuhito Shomura; Yoshiki Higuchi; Shun Hirota
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-04       Impact factor: 15.336

8.  Rational design of artificial dye-decolorizing peroxidases using myoglobin by engineering Tyr/Trp in the heme center.

Authors:  Le-Le Li; Hong Yuan; Fei Liao; Bo He; Shu-Qin Gao; Ge-Bo Wen; Xiangshi Tan; Ying-Wu Lin
Journal:  Dalton Trans       Date:  2017-08-29       Impact factor: 4.390

9.  Cytochrome P450-Catalyzed Insertion of Carbenoids into N-H Bonds.

Authors:  Z Jane Wang; Nicole E Peck; Hans Renata; Frances H Arnold
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

10.  Artificial metalloenzymes for enantioselective catalysis based on biotin-avidin.

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Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

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  5 in total

1.  Green and efficient biosynthesis of indigo from indole by engineered myoglobins.

Authors:  Can Liu; Jiakun Xu; Shu-Qin Gao; Bo He; Chuan-Wan Wei; Xiao-Juan Wang; Zhonghua Wang; Ying-Wu Lin
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2.  Tailored Transition-Metal Coordination Environments in Imidazole-Modified DNA G-Quadruplexes.

Authors:  Philip M Punt; Guido H Clever
Journal:  Chemistry       Date:  2019-10-10       Impact factor: 5.236

3.  Construction of ferritin hydrogels utilizing subunit-subunit interactions.

Authors:  Masaru Yamanaka; Tsuyoshi Mashima; Michio Ogihara; Mei Okamoto; Takayuki Uchihashi; Shun Hirota
Journal:  PLoS One       Date:  2021-11-03       Impact factor: 3.240

4.  Enhancement of protein stability by an additional disulfide bond designed in human neuroglobin.

Authors:  Hai-Xiao Liu; Lianzhi Li; Xin-Zhi Yang; Chuan-Wan Wei; Hui-Min Cheng; Shu-Qin Gao; Ge-Bo Wen; Ying-Wu Lin
Journal:  RSC Adv       Date:  2019-01-31       Impact factor: 4.036

5.  Molecular Dynamics Simulation and Kinetic Study of Fluoride Binding to V21C/V66C Myoglobin with a Cytoglobin-like Disulfide Bond.

Authors:  Lu-Lu Yin; Jia-Kun Xu; Xiao-Juan Wang; Shu-Qin Gao; Ying-Wu Lin
Journal:  Int J Mol Sci       Date:  2020-04-04       Impact factor: 5.923

  5 in total

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