Literature DB >> 25470533

A streamlined CRISPR pipeline to reliably generate zebrafish frameshifting alleles.

Jared Coffin Talbot1, Sharon L Amacher.   

Abstract

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Year:  2014        PMID： 25470533      PMCID： PMC4248249          DOI： 10.1089/zeb.2014.1047

Source DB:  PubMed          Journal:  Zebrafish        ISSN： 1545-8547            Impact factor:   1.985


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  12 in total

1.  Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.

Authors:  Li-En Jao; Susan R Wente; Wenbiao Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-05       Impact factor: 11.205

2.  Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish.

Authors:  Alexander Hruscha; Peter Krawitz; Alexandra Rechenberg; Verena Heinrich; Jochen Hecht; Christian Haass; Bettina Schmid
Journal:  Development       Date:  2013-11-20       Impact factor: 6.868

3.  uAnalyze: web-based high-resolution DNA melting analysis with comparison to thermodynamic predictions.

Authors:  Zachary L Dwight; Robert Palais; Carl T Wittwer
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2012 Nov-Dec       Impact factor: 3.710

Review 4.  The CRISPR system--keeping zebrafish gene targeting fresh.

Authors:  Patrick R Blackburn; Jarryd M Campbell; Karl J Clark; Stephen C Ekker
Journal:  Zebrafish       Date:  2013-03-28       Impact factor: 1.985

Review 5.  Exploiting CRISPR/Cas systems for biotechnology.

Authors:  Timothy R Sampson; David S Weiss
Journal:  Bioessays       Date:  2014-01       Impact factor: 4.345

6.  Crystal structure of Cas9 in complex with guide RNA and target DNA.

Authors:  Hiroshi Nishimasu; F Ann Ran; Patrick D Hsu; Silvana Konermann; Soraya I Shehata; Naoshi Dohmae; Ryuichiro Ishitani; Feng Zhang; Osamu Nureki
Journal:  Cell       Date:  2014-02-13       Impact factor: 41.582

7.  Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Authors:  Hye Joo Kim; Hyung Joo Lee; Hyojin Kim; Seung Woo Cho; Jin-Soo Kim
Journal:  Genome Res       Date:  2009-05-21       Impact factor: 9.043

8.  Efficient genome editing in zebrafish using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Shengdar Q Tsai; Jeffry D Sander; Randall T Peterson; J-R Joanna Yeh; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

9.  Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome.

Authors:  Timothy J Dahlem; Kazuyuki Hoshijima; Michael J Jurynec; Derrick Gunther; Colby G Starker; Alexandra S Locke; Allison M Weis; Daniel F Voytas; David Jonah Grunwald
Journal:  PLoS Genet       Date:  2012-08-16       Impact factor: 5.917

10.  Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.

Authors:  James A Gagnon; Eivind Valen; Summer B Thyme; Peng Huang; Laila Akhmetova; Laila Ahkmetova; Andrea Pauli; Tessa G Montague; Steven Zimmerman; Constance Richter; Alexander F Schier
Journal:  PLoS One       Date:  2014-05-29       Impact factor: 3.240
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  69 in total

1.  Putative binding sites for mir-125 family miRNAs in the mouse Lfng 3'UTR affect transcript expression in the segmentation clock, but mir-125a-5p is dispensable for normal somitogenesis.

Authors:  Kanu Wahi; Sophia Friesen; Vincenzo Coppola; Susan E Cole
Journal:  Dev Dyn       Date:  2017-08-18       Impact factor: 3.780

2.  Biallelic sequence variants in INTS1 in patients with developmental delays, cataracts, and craniofacial anomalies.

Authors:  Max Krall; Stephanie Htun; Rhonda E Schnur; Alice S Brooks; Laura Baker; Alejandra de Alba Campomanes; Ryan E Lamont; Karen W Gripp; Dina Schneidman-Duhovny; A Micheil Innes; Grazia M S Mancini; Anne M Slavotinek
Journal:  Eur J Hum Genet       Date:  2019-01-08       Impact factor: 4.246

3.  Cell fusion is differentially regulated in zebrafish post-embryonic slow and fast muscle.

Authors:  Kimberly J Hromowyk; Jared C Talbot; Brit L Martin; Paul M L Janssen; Sharon L Amacher
Journal:  Dev Biol       Date:  2020-03-10       Impact factor: 3.582

4.  A Gene Implicated in Activation of Retinoic Acid Receptor Targets Is a Novel Renal Agenesis Gene in Humans.

Authors:  Patrick D Brophy; Maria Rasmussen; Mrutyunjaya Parida; Greg Bonde; Benjamin W Darbro; Xiaojing Hong; Jason C Clarke; Kevin A Peterson; James Denegre; Michael Schneider; Caroline R Sussman; Lone Sunde; Dorte L Lildballe; Jens Michael Hertz; Robert A Cornell; Stephen A Murray; J Robert Manak
Journal:  Genetics       Date:  2017-07-24       Impact factor: 4.562

5.  Muscle precursor cell movements in zebrafish are dynamic and require Six family genes.

Authors:  Jared C Talbot; Emily M Teets; Dhanushika Ratnayake; Phan Q Duy; Peter D Currie; Sharon L Amacher
Journal:  Development       Date:  2019-05-15       Impact factor: 6.868

6.  Drug-selective Anesthetic Insensitivity of Zebrafish Lacking γ-Aminobutyric Acid Type A Receptor β3 Subunits.

Authors:  Xiaoxuan Yang; Youssef Jounaidi; Kusumika Mukherjee; Ryan J Fantasia; Eric C Liao; Buwei Yu; Stuart A Forman
Journal:  Anesthesiology       Date:  2019-12       Impact factor: 7.892

7.  Satellite-like cells contribute to pax7-dependent skeletal muscle repair in adult zebrafish.

Authors:  Michael A Berberoglu; Thomas L Gallagher; Zachary T Morrow; Jared C Talbot; Kimberly J Hromowyk; Inês M Tenente; David M Langenau; Sharon L Amacher
Journal:  Dev Biol       Date:  2017-03-07       Impact factor: 3.582

8.  Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness.

Authors:  Anne Slavotinek; Doriana Misceo; Stephanie Htun; Linda Mathisen; Eirik Frengen; Michelle Foreman; Jennifer E Hurtig; Liz Enyenihi; Maria C Sterrett; Sara W Leung; Dina Schneidman-Duhovny; Juvianee Estrada-Veras; Jacque L Duncan; Charlotte A Haaxma; Erik-Jan Kamsteeg; Vivian Xia; Daniah Beleford; Yue Si; Ganka Douglas; Hans Einar Treidene; Ambro van Hoof; Milo B Fasken; Anita H Corbett
Journal:  Hum Mol Genet       Date:  2020-08-03       Impact factor: 6.150

9.  GIPC proteins negatively modulate Plexind1 signaling during vascular development.

Authors:  Jorge Carretero-Ortega; Zinal Chhangawala; Shane Hunt; Carlos Narvaez; Javier Menéndez-González; Carl M Gay; Tomasz Zygmunt; Xiaochun Li; Jesús Torres-Vázquez
Journal:  Elife       Date:  2019-05-03       Impact factor: 8.140

10.  CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity.

Authors:  Blake Carrington; Gaurav K Varshney; Shawn M Burgess; Raman Sood
Journal:  Nucleic Acids Res       Date:  2015-08-07       Impact factor: 16.971
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