Literature DB >> 28739660

A Gene Implicated in Activation of Retinoic Acid Receptor Targets Is a Novel Renal Agenesis Gene in Humans.

Patrick D Brophy1, Maria Rasmussen2, Mrutyunjaya Parida3, Greg Bonde4, Benjamin W Darbro1, Xiaojing Hong3, Jason C Clarke1, Kevin A Peterson5, James Denegre5, Michael Schneider6, Caroline R Sussman7, Lone Sunde2, Dorte L Lildballe2, Jens Michael Hertz8, Robert A Cornell4, Stephen A Murray5, J Robert Manak1,3,9.   

Abstract

Renal agenesis (RA) is one of the more extreme examples of congenital anomalies of the kidney and urinary tract (CAKUT). Bilateral renal agenesis is almost invariably fatal at birth, and unilateral renal agenesis can lead to future health issues including end-stage renal disease. Genetic investigations have identified several gene variants that cause RA, including EYA1, LHX1, and WT1 However, whereas compound null mutations of genes encoding α and γ retinoic acid receptors (RARs) cause RA in mice, to date there have been no reports of variants in RAR genes causing RA in humans. In this study, we carried out whole exome sequence analysis of two families showing inheritance of an RA phenotype, and in both identified a single candidate gene, GREB1L Analysis of a zebrafish greb1l loss-of-function mutant revealed defects in the pronephric kidney just prior to death, and F0 CRISPR/Cas9 mutagenesis of Greb1l in the mouse revealed kidney agenesis phenotypes, implicating Greb1l in this disorder. GREB1L resides in a chromatin complex with RAR members, and our data implicate GREB1L as a coactivator for RARs. This study is the first to associate a component of the RAR pathway with renal agenesis in humans.
Copyright © 2017 by the Genetics Society of America.

Entities:  

Keywords:  CAKUT; GREB1L; renal agenesis; retinoic acid; whole exome sequencing

Mesh:

Substances:

Year:  2017        PMID: 28739660      PMCID: PMC5586373          DOI: 10.1534/genetics.117.1125

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  100 in total

1.  WT-1 is required for early kidney development.

Authors:  J A Kreidberg; H Sariola; J M Loring; M Maeda; J Pelletier; D Housman; R Jaenisch
Journal:  Cell       Date:  1993-08-27       Impact factor: 41.582

2.  A Dominant Mutation in Nuclear Receptor Interacting Protein 1 Causes Urinary Tract Malformations via Dysregulation of Retinoic Acid Signaling.

Authors:  Asaf Vivante; Nina Mann; Hagith Yonath; Anna-Carina Weiss; Maike Getwan; Michael M Kaminski; Tobias Bohnenpoll; Catherine Teyssier; Jing Chen; Shirlee Shril; Amelie T van der Ven; Hadas Ityel; Johanna Magdalena Schmidt; Eugen Widmeier; Stuart B Bauer; Simone Sanna-Cherchi; Ali G Gharavi; Weining Lu; Daniella Magen; Rachel Shukrun; Richard P Lifton; Velibor Tasic; Horia C Stanescu; Vincent Cavaillès; Robert Kleta; Yair Anikster; Benjamin Dekel; Andreas Kispert; Soeren S Lienkamp; Friedhelm Hildebrandt
Journal:  J Am Soc Nephrol       Date:  2017-04-05       Impact factor: 10.121

3.  Fras1 deficiency results in cryptophthalmos, renal agenesis and blebbed phenotype in mice.

Authors:  Sophia Vrontou; Petros Petrou; Barbara I Meyer; Vassilis K Galanopoulos; Kenji Imai; Masayuki Yanagi; Kamal Chowdhury; Peter J Scambler; Georges Chalepakis
Journal:  Nat Genet       Date:  2003-06       Impact factor: 38.330

4.  dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations.

Authors:  Xiaoming Liu; Xueqiu Jian; Eric Boerwinkle
Journal:  Hum Mutat       Date:  2013-07-10       Impact factor: 4.878

5.  Renal aplasia in humans is associated with RET mutations.

Authors:  Michael A Skinner; Shawn D Safford; Justin G Reeves; Margaret E Jackson; Alex J Freemerman
Journal:  Am J Hum Genet       Date:  2008-01-31       Impact factor: 11.025

6.  Genic intolerance to functional variation and the interpretation of personal genomes.

Authors:  Slavé Petrovski; Quanli Wang; Erin L Heinzen; Andrew S Allen; David B Goldstein
Journal:  PLoS Genet       Date:  2013-08-22       Impact factor: 5.917

7.  MMP21 is mutated in human heterotaxy and is required for normal left-right asymmetry in vertebrates.

Authors:  Anne Guimier; George C Gabriel; Fanny Bajolle; Michael Tsang; Hui Liu; Aaron Noll; Molly Schwartz; Rajae El Malti; Laurie D Smith; Nikolai T Klena; Gina Jimenez; Neil A Miller; Myriam Oufadem; Anne Moreau de Bellaing; Hisato Yagi; Carol J Saunders; Candice N Baker; Sylvie Di Filippo; Kevin A Peterson; Isabelle Thiffault; Christine Bole-Feysot; Linda D Cooley; Emily G Farrow; Cécile Masson; Patric Schoen; Jean-François Deleuze; Patrick Nitschké; Stanislas Lyonnet; Loic de Pontual; Stephen A Murray; Damien Bonnet; Stephen F Kingsmore; Jeanne Amiel; Patrice Bouvagnet; Cecilia W Lo; Christopher T Gordon
Journal:  Nat Genet       Date:  2015-10-05       Impact factor: 38.330

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  Batf3 deficiency reveals a critical role for CD8alpha+ dendritic cells in cytotoxic T cell immunity.

Authors:  Kai Hildner; Brian T Edelson; Whitney E Purtha; Mark Diamond; Hirokazu Matsushita; Masako Kohyama; Boris Calderon; Barbara U Schraml; Emil R Unanue; Michael S Diamond; Robert D Schreiber; Theresa L Murphy; Kenneth M Murphy
Journal:  Science       Date:  2008-11-14       Impact factor: 47.728

10.  The cdx genes and retinoic acid control the positioning and segmentation of the zebrafish pronephros.

Authors:  Rebecca A Wingert; Rori Selleck; Jing Yu; Huai-Dong Song; Zhu Chen; Anhua Song; Yi Zhou; Bernard Thisse; Christine Thisse; Andrew P McMahon; Alan J Davidson
Journal:  PLoS Genet       Date:  2007-10       Impact factor: 5.917

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  22 in total

1.  De novo variants in GREB1L are associated with non-syndromic inner ear malformations and deafness.

Authors:  Isabelle Schrauwen; Elina Kari; Jacob Mattox; Lorida Llaci; Joanna Smeeton; Marcus Naymik; David W Raible; James A Knowles; J Gage Crump; Matthew J Huentelman; Rick A Friedman
Journal:  Hum Genet       Date:  2018-06-28       Impact factor: 4.132

Review 2.  Genetic basis of human congenital anomalies of the kidney and urinary tract.

Authors:  Simone Sanna-Cherchi; Rik Westland; Gian Marco Ghiggeri; Ali G Gharavi
Journal:  J Clin Invest       Date:  2018-01-02       Impact factor: 14.808

3.  Heterozygous variants in the DVL2 interaction region of DACT1 cause CAKUT and features of Townes-Brocks syndrome 2.

Authors:  Anne Christians; Esra Kesdiren; Imke Hennies; Alejandro Hofmann; Mark-Oliver Trowe; Frank Brand; Helge Martens; Ann Christin Gjerstad; Zoran Gucev; Matthias Zirngibl; Robert Geffers; Tomáš Seeman; Heiko Billing; Anna Bjerre; Velibor Tasic; Andreas Kispert; Benno Ure; Dieter Haffner; Jens Dingemann; Ruthild G Weber
Journal:  Hum Genet       Date:  2022-09-06       Impact factor: 5.881

4.  Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract.

Authors:  Amelie T van der Ven; Dervla M Connaughton; Hadas Ityel; Nina Mann; Makiko Nakayama; Jing Chen; Asaf Vivante; Daw-Yang Hwang; Julian Schulz; Daniela A Braun; Johanna Magdalena Schmidt; David Schapiro; Ronen Schneider; Jillian K Warejko; Ankana Daga; Amar J Majmundar; Weizhen Tan; Tilman Jobst-Schwan; Tobias Hermle; Eugen Widmeier; Shazia Ashraf; Ali Amar; Charlotte A Hoogstraaten; Hannah Hugo; Thomas M Kitzler; Franziska Kause; Caroline M Kolvenbach; Rufeng Dai; Leslie Spaneas; Kassaundra Amann; Deborah R Stein; Michelle A Baum; Michael J G Somers; Nancy M Rodig; Michael A Ferguson; Avram Z Traum; Ghaleb H Daouk; Radovan Bogdanović; Natasa Stajić; Neveen A Soliman; Jameela A Kari; Sherif El Desoky; Hanan M Fathy; Danko Milosevic; Muna Al-Saffar; Hazem S Awad; Loai A Eid; Aravind Selvin; Prabha Senguttuvan; Simone Sanna-Cherchi; Heidi L Rehm; Daniel G MacArthur; Monkol Lek; Kristen M Laricchia; Michael W Wilson; Shrikant M Mane; Richard P Lifton; Richard S Lee; Stuart B Bauer; Weining Lu; Heiko M Reutter; Velibor Tasic; Shirlee Shril; Friedhelm Hildebrandt
Journal:  J Am Soc Nephrol       Date:  2018-08-24       Impact factor: 10.121

Review 5.  Precision gene editing technology and applications in nephrology.

Authors:  Zachary WareJoncas; Jarryd M Campbell; Gabriel Martínez-Gálvez; William A C Gendron; Michael A Barry; Peter C Harris; Caroline R Sussman; Stephen C Ekker
Journal:  Nat Rev Nephrol       Date:  2018-11       Impact factor: 28.314

6.  Exome-wide Association Study Identifies GREB1L Mutations in Congenital Kidney Malformations.

Authors:  Simone Sanna-Cherchi; Kamal Khan; Rik Westland; Priya Krithivasan; Lorraine Fievet; Hila Milo Rasouly; Iuliana Ionita-Laza; Valentina P Capone; David A Fasel; Krzysztof Kiryluk; Sitharthan Kamalakaran; Monica Bodria; Edgar A Otto; Matthew G Sampson; Christopher E Gillies; Virginia Vega-Warner; Katarina Vukojevic; Igor Pediaditakis; Gabriel S Makar; Adele Mitrotti; Miguel Verbitsky; Jeremiah Martino; Qingxue Liu; Young-Ji Na; Vinicio Goj; Gianluigi Ardissino; Maddalena Gigante; Loreto Gesualdo; Magdalena Janezcko; Marcin Zaniew; Cathy Lee Mendelsohn; Shirlee Shril; Friedhelm Hildebrandt; Joanna A E van Wijk; Adela Arapovic; Marijan Saraga; Landino Allegri; Claudia Izzi; Francesco Scolari; Velibor Tasic; Gian Marco Ghiggeri; Anna Latos-Bielenska; Anna Materna-Kiryluk; Shrikant Mane; David B Goldstein; Richard P Lifton; Nicholas Katsanis; Erica E Davis; Ali G Gharavi
Journal:  Am J Hum Genet       Date:  2017-11-02       Impact factor: 11.025

7.  Mutations in GREB1L Cause Bilateral Kidney Agenesis in Humans and Mice.

Authors:  Lara De Tomasi; Pierre David; Camille Humbert; Flora Silbermann; Christelle Arrondel; Frédéric Tores; Stéphane Fouquet; Audrey Desgrange; Olivier Niel; Christine Bole-Feysot; Patrick Nitschké; Joëlle Roume; Marie-Pierre Cordier; Christine Pietrement; Bertrand Isidor; Philippe Khau Van Kien; Marie Gonzales; Marie-Hélène Saint-Frison; Jelena Martinovic; Robert Novo; Juliette Piard; Christelle Cabrol; Ishwar C Verma; Ratna Puri; Hubert Journel; Jacqueline Aziza; Laurent Gavard; Marie-Hélène Said-Menthon; Laurence Heidet; Sophie Saunier; Cécile Jeanpierre
Journal:  Am J Hum Genet       Date:  2017-11-02       Impact factor: 11.025

Review 8.  Mechanistic Drivers of Müllerian Duct Development and Differentiation Into the Oviduct.

Authors:  Laura Santana Gonzalez; Ioanna A Rota; Mara Artibani; Matteo Morotti; Zhiyuan Hu; Nina Wietek; Abdulkhaliq Alsaadi; Ashwag Albukhari; Tatjana Sauka-Spengler; Ahmed A Ahmed
Journal:  Front Cell Dev Biol       Date:  2021-03-08

9.  Altered Expression of Candidate Genes in Mayer-Rokitansky-Küster-Hauser Syndrome May Influence Vaginal Keratinocytes Biology: A Focus on Protein Kinase X.

Authors:  Paola Pontecorvi; Francesca Megiorni; Simona Camero; Simona Ceccarelli; Laura Bernardini; Anna Capalbo; Eleni Anastasiadou; Giulia Gerini; Elena Messina; Giorgia Perniola; Pierluigi Benedetti Panici; Paola Grammatico; Antonio Pizzuti; Cinzia Marchese
Journal:  Biology (Basel)       Date:  2021-05-21

10.  Biallelic Pathogenic GFRA1 Variants Cause Autosomal Recessive Bilateral Renal Agenesis.

Authors:  Veronica Arora; Suliman Khan; Ayman W. El-Hattab; Ratna Dua Puri; Maria Eugenia Rocha; Rijad Merdzanic; Omid Paknia; Christian Beetz; Arndt Rolfs; Aida M Bertoli-Avella; Peter Bauer; Ishwar C Verma
Journal:  J Am Soc Nephrol       Date:  2020-10-05       Impact factor: 10.121

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