Literature DB >> 19470664

Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Hye Joo Kim1, Hyung Joo Lee, Hyojin Kim, Seung Woo Cho, Jin-Soo Kim.   

Abstract

Broad applications of zinc finger nuclease (ZFN) technology-which allows targeted genome editing-in research, medicine, and biotechnology are hampered by the lack of a convenient, rapid, and publicly available method for the synthesis of functional ZFNs. Here we describe an efficient and easy-to-practice modular-assembly method using publicly available zinc fingers to make ZFNs that can modify the DNA sequences of predetermined genomic sites in human cells. We synthesized and tested hundreds of ZFNs to target dozens of different sites in the human CCR5 gene-a co-receptor required for HIV infection-and found that many of these nucleases induced site-specific mutations in the CCR5 sequence. Because human cells that harbor CCR5 null mutations are functional and normal, these ZFNs might be used for (1) knocking out CCR5 to produce T-cells that are resistant to HIV infection in AIDS patients or (2) inserting therapeutic genes at "safe sites" in gene therapy applications.

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Year:  2009        PMID: 19470664      PMCID: PMC2704428          DOI: 10.1101/gr.089417.108

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  50 in total

Review 1.  Critical parameters for genome editing using zinc finger nucleases.

Authors:  Todd D Camenisch; Murray H Brilliant; David J Segal
Journal:  Mini Rev Med Chem       Date:  2008-06       Impact factor: 3.862

Review 2.  Knockout punches with a fistful of zinc fingers.

Authors:  John H Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-09       Impact factor: 11.205

3.  Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.

Authors:  Xiangdong Meng; Marcus B Noyes; Lihua J Zhu; Nathan D Lawson; Scot A Wolfe
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

4.  Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases.

Authors:  Yolanda Santiago; Edmond Chan; Pei-Qi Liu; Salvatore Orlando; Lin Zhang; Fyodor D Urnov; Michael C Holmes; Dmitry Guschin; Adam Waite; Jeffrey C Miller; Edward J Rebar; Philip D Gregory; Aaron Klug; Trevor N Collingwood
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-21       Impact factor: 11.205

5.  Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases.

Authors:  Elena E Perez; Jianbin Wang; Jeffrey C Miller; Yann Jouvenot; Kenneth A Kim; Olga Liu; Nathaniel Wang; Gary Lee; Victor V Bartsevich; Ya-Li Lee; Dmitry Y Guschin; Igor Rupniewski; Adam J Waite; Carmine Carpenito; Richard G Carroll; Jordan S Orange; Fyodor D Urnov; Edward J Rebar; Dale Ando; Philip D Gregory; James L Riley; Michael C Holmes; Carl H June
Journal:  Nat Biotechnol       Date:  2008-06-29       Impact factor: 54.908

Review 6.  Zinc-finger nucleases: the next generation emerges.

Authors:  Toni Cathomen; J Keith Joung
Journal:  Mol Ther       Date:  2008-06-10       Impact factor: 11.454

7.  Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.

Authors:  Morgan L Maeder; Stacey Thibodeau-Beganny; Anna Osiak; David A Wright; Reshma M Anthony; Magdalena Eichtinger; Tao Jiang; Jonathan E Foley; Ronnie J Winfrey; Jeffrey A Townsend; Erica Unger-Wallace; Jeffry D Sander; Felix Müller-Lerch; Fengli Fu; Joseph Pearlberg; Carl Göbel; Justin P Dassie; Shondra M Pruett-Miller; Matthew H Porteus; Dennis C Sgroi; A John Iafrate; Drena Dobbs; Paul B McCray; Toni Cathomen; Daniel F Voytas; J Keith Joung
Journal:  Mol Cell       Date:  2008-07-25       Impact factor: 17.970

8.  Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.

Authors:  Kelly J Beumer; Jonathan K Trautman; Ana Bozas; Ji-Long Liu; Jared Rutter; Joseph G Gall; Dana Carroll
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

9.  Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.

Authors:  Yannick Doyon; Jasmine M McCammon; Jeffrey C Miller; Farhoud Faraji; Catherine Ngo; George E Katibah; Rainier Amora; Toby D Hocking; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Sharon L Amacher
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

10.  Transduction of artificial transcriptional regulatory proteins into human cells.

Authors:  Chae-Ok Yun; Hyun-Chul Shin; Tae-Dong Kim; Wan-Hee Yoon; Yoon-A Kang; Heung-Sun Kwon; Seong Keun Kim; Jin-Soo Kim
Journal:  Nucleic Acids Res       Date:  2008-07-21       Impact factor: 16.971

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  218 in total

1.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Genome editing in human stem cells.

Authors:  Susan M Byrne; Prashant Mali; George M Church
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

3.  Surrogate reporters for enrichment of cells with nuclease-induced mutations.

Authors:  Hyojin Kim; Eunji Um; Sung-Rae Cho; Chorong Jung; Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2011-10-09       Impact factor: 28.547

Review 4.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

5.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

6.  Genome editing with modularly assembled zinc-finger nucleases.

Authors:  Jin-Soo Kim; Hyung Joo Lee; Dana Carroll
Journal:  Nat Methods       Date:  2010-02       Impact factor: 28.547

7.  Preassembled zinc-finger arrays for rapid construction of ZFNs.

Authors:  Seokjoong Kim; Mi Jung Lee; Hyojin Kim; Mijin Kang; Jin-Soo Kim
Journal:  Nat Methods       Date:  2011-01       Impact factor: 28.547

8.  Zinc-finger nucleases transition to the CoDA.

Authors:  David J Segal
Journal:  Nat Methods       Date:  2011-01       Impact factor: 28.547

9.  Genomic Determinants of THAP11/ZNF143/HCFC1 Complex Recruitment to Chromatin.

Authors:  Aurimas Vinckevicius; J Brandon Parker; Debabrata Chakravarti
Journal:  Mol Cell Biol       Date:  2015-09-28       Impact factor: 4.272

10.  Targeted genome editing in Aedes aegypti using TALENs.

Authors:  Azadeh Aryan; Kevin M Myles; Zach N Adelman
Journal:  Methods       Date:  2014-02-18       Impact factor: 3.608

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