Literature DB >> 24323919

Exploiting CRISPR/Cas systems for biotechnology.

Timothy R Sampson1, David S Weiss.   

Abstract

The Cas9 endonuclease is the central component of the Type II CRISPR/Cas system, a prokaryotic adaptive restriction system against invading nucleic acids, such as those originating from bacteriophages and plasmids. Recently, this RNA-directed DNA endonuclease has been harnessed to target DNA sequences of interest. Here, we review the development of Cas9 as an important tool to not only edit the genomes of a number of different prokaryotic and eukaryotic species, but also as an efficient system for site-specific transcriptional repression or activation. Additionally, a specific Cas9 protein has been observed to target an RNA substrate, suggesting that Cas9 may have the ability to be programmed to target RNA as well. Cas proteins from other CRISPR/Cas subtypes may also be exploited in this regard. Thus, CRISPR/Cas systems represent an effective and versatile biotechnological tool, which will have significant impact on future advancements in genome engineering.
© 2014 WILEY Periodicals, Inc.

Entities:  

Keywords:  CRISPR; Cas9; RNAi; biotechnology; genome editing

Mesh:

Substances:

Year:  2014        PMID: 24323919      PMCID: PMC4385387          DOI: 10.1002/bies.201300135

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  28 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila.

Authors:  Zhongsheng Yu; Mengda Ren; Zhanxiang Wang; Bo Zhang; Yikang S Rong; Renjie Jiao; Guanjun Gao
Journal:  Genetics       Date:  2013-07-05       Impact factor: 4.562

3.  DNA targeting specificity of RNA-guided Cas9 nucleases.

Authors:  Patrick D Hsu; David A Scott; Joshua A Weinstein; F Ann Ran; Silvana Konermann; Vineeta Agarwala; Yinqing Li; Eli J Fine; Xuebing Wu; Ophir Shalem; Thomas J Cradick; Luciano A Marraffini; Gang Bao; Feng Zhang
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

4.  Precise and heritable genome editing in evolutionarily diverse nematodes using TALENs and CRISPR/Cas9 to engineer insertions and deletions.

Authors:  Te-Wen Lo; Catherine S Pickle; Steven Lin; Edward J Ralston; Mark Gurling; Caitlin M Schartner; Qian Bian; Jennifer A Doudna; Barbara J Meyer
Journal:  Genetics       Date:  2013-08-09       Impact factor: 4.562

5.  Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

Authors:  Zhonggang Hou; Yan Zhang; Nicholas E Propson; Sara E Howden; Li-Fang Chu; Erik J Sontheimer; James A Thomson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

6.  Orthogonal Cas9 proteins for RNA-guided gene regulation and editing.

Authors:  Kevin M Esvelt; Prashant Mali; Jonathan L Braff; Mark Moosburner; Stephanie J Yaung; George M Church
Journal:  Nat Methods       Date:  2013-09-29       Impact factor: 28.547

7.  High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity.

Authors:  Vikram Pattanayak; Steven Lin; John P Guilinger; Enbo Ma; Jennifer A Doudna; David R Liu
Journal:  Nat Biotechnol       Date:  2013-08-11       Impact factor: 54.908

8.  Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system.

Authors:  Albert W Cheng; Haoyi Wang; Hui Yang; Linyu Shi; Yarden Katz; Thorold W Theunissen; Sudharshan Rangarajan; Chikdu S Shivalila; Daniel B Dadon; Rudolf Jaenisch
Journal:  Cell Res       Date:  2013-08-27       Impact factor: 25.617

9.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

10.  CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Authors:  Thomas J Cradick; Eli J Fine; Christopher J Antico; Gang Bao
Journal:  Nucleic Acids Res       Date:  2013-08-11       Impact factor: 16.971

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  20 in total

1.  A streamlined CRISPR pipeline to reliably generate zebrafish frameshifting alleles.

Authors:  Jared Coffin Talbot; Sharon L Amacher
Journal:  Zebrafish       Date:  2014-12       Impact factor: 1.985

Review 2.  Assessing spatial learning and memory in rodents.

Authors:  Charles V Vorhees; Michael T Williams
Journal:  ILAR J       Date:  2014

Review 3.  Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

Authors:  John van der Oost; Edze R Westra; Ryan N Jackson; Blake Wiedenheft
Journal:  Nat Rev Microbiol       Date:  2014-06-09       Impact factor: 60.633

Review 4.  Delivery strategies of the CRISPR-Cas9 gene-editing system for therapeutic applications.

Authors:  Chang Liu; Li Zhang; Hao Liu; Kun Cheng
Journal:  J Control Release       Date:  2017-09-11       Impact factor: 9.776

Review 5.  Current and future prospects for CRISPR-based tools in bacteria.

Authors:  Michelle L Luo; Ryan T Leenay; Chase L Beisel
Journal:  Biotechnol Bioeng       Date:  2015-10-27       Impact factor: 4.530

6.  A CRISPRi-dCas9 System for Archaea and Its Use To Examine Gene Function during Nitrogen Fixation by Methanosarcina acetivorans.

Authors:  Ahmed E Dhamad; Daniel J Lessner
Journal:  Appl Environ Microbiol       Date:  2020-10-15       Impact factor: 4.792

7.  Overview of CRISPR-Cas9 Biology.

Authors:  Hannah K Ratner; Timothy R Sampson; David S Weiss
Journal:  Cold Spring Harb Protoc       Date:  2016-12-01

8.  Genome engineering with TALENs and ZFNs: repair pathways and donor design.

Authors:  Dana Carroll; Kelly J Beumer
Journal:  Methods       Date:  2014-04-02       Impact factor: 3.608

Review 9.  Microfluidics in Biotechnology: Overview and Status Quo.

Authors:  Janina Bahnemann; Alexander Grünberger
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.768

10.  Pervasive Genotypic Mosaicism in Founder Mice Derived from Genome Editing through Pronuclear Injection.

Authors:  Daniel Oliver; Shuiqiao Yuan; Hayden McSwiggin; Wei Yan
Journal:  PLoS One       Date:  2015-06-08       Impact factor: 3.240

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