Literature DB >> 23536990

The CRISPR system--keeping zebrafish gene targeting fresh.

Patrick R Blackburn1, Jarryd M Campbell, Karl J Clark, Stephen C Ekker.   

Abstract

We are entering a new era in our ability to modify and edit the genomes of model organisms. Zinc finger nucleases (ZFNs) opened the door to the first custom nuclease-targeted genome engineering in the late 1990s. However, ZFNs remained out of reach for most research labs because of the difficulty of production, high costs, and modest efficacy in many applications. Transcription activator-like effector nucleases (TALENs) were built upon a DNA binding system discovered in a group of plant bacterial pathogens and broadened custom nuclease technology, showing significant improvements in both targeting flexibility and efficiency. Perhaps most importantly, TALENs are open source and easy to produce, providing zebrafish laboratories around the world with affordable tools that can be made in-house rapidly, at low cost, and with reliably high activity. Now a new system for targeted genome engineering derived from the CRISPR/Cas system in eubacteria and archaea promises to simplify this process further. Together, these tools will help overcome many of the bottlenecks that have constrained gene targeting in zebrafish, paving the way for advanced genome engineering applications in this model teleost.

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Year:  2013        PMID: 23536990      PMCID: PMC3629780          DOI: 10.1089/zeb.2013.9999

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  21 in total

Review 1.  RNA-guided genetic silencing systems in bacteria and archaea.

Authors:  Blake Wiedenheft; Samuel H Sternberg; Jennifer A Doudna
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

2.  Heritable gene targeting in zebrafish using customized TALENs.

Authors:  Peng Huang; An Xiao; Mingguo Zhou; Zuoyan Zhu; Shuo Lin; Bo Zhang
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

Review 3.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

4.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

5.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

6.  An optimized two-finger archive for ZFN-mediated gene targeting.

Authors:  Ankit Gupta; Ryan G Christensen; Amy L Rayla; Abirami Lakshmanan; Gary D Stormo; Scot A Wolfe
Journal:  Nat Methods       Date:  2012-04-29       Impact factor: 28.547

7.  FLASH assembly of TALENs for high-throughput genome editing.

Authors:  Deepak Reyon; Shengdar Q Tsai; Cyd Khayter; Jennifer A Foden; Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs).

Authors:  Finola E Moore; Deepak Reyon; Jeffry D Sander; Sarah A Martinez; Jessica S Blackburn; Cyd Khayter; Cherie L Ramirez; J Keith Joung; David M Langenau
Journal:  PLoS One       Date:  2012-05-24       Impact factor: 3.240

10.  Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.

Authors:  Cherie L Ramirez; Michael T Certo; Claudio Mussolino; Mathew J Goodwin; Thomas J Cradick; Anton P McCaffrey; Toni Cathomen; Andrew M Scharenberg; J Keith Joung
Journal:  Nucleic Acids Res       Date:  2012-02-28       Impact factor: 16.971

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  41 in total

1.  Technical advances in the generation of transgenic animals and in their applications. Nantes, France, June 7th 2013.

Authors:  Séverine Ménoret; Laurent Tesson; Séverine Rémy; Reynald Thinard; Claire Usal; Laure-Hélène Ouisse; Virginie Thepenier; Ignacio Anegon
Journal:  Transgenic Res       Date:  2013-08-02       Impact factor: 2.788

2.  Nkx2.5 is essential to establish normal heart rate variability in the zebrafish embryo.

Authors:  Jamie K Harrington; Robert Sorabella; Abigail Tercek; Joseph R Isler; Kimara L Targoff
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2017-06-14       Impact factor: 3.619

Review 3.  A tale of two models: mouse and zebrafish as complementary models for lymphatic studies.

Authors:  Jun-Dae Kim; Suk-Won Jin
Journal:  Mol Cells       Date:  2014-05-23       Impact factor: 5.034

4.  A streamlined CRISPR pipeline to reliably generate zebrafish frameshifting alleles.

Authors:  Jared Coffin Talbot; Sharon L Amacher
Journal:  Zebrafish       Date:  2014-12       Impact factor: 1.985

5.  Genome Editing in Astyanax mexicanus Using Transcription Activator-like Effector Nucleases (TALENs).

Authors:  Johanna E Kowalko; Li Ma; William R Jeffery
Journal:  J Vis Exp       Date:  2016-06-20       Impact factor: 1.355

Review 6.  A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

Authors:  Ingo Braasch; Samuel M Peterson; Thomas Desvignes; Braedan M McCluskey; Peter Batzel; John H Postlethwait
Journal:  J Exp Zool B Mol Dev Evol       Date:  2014-08-11       Impact factor: 2.656

Review 7.  Zebrafish as a model to investigate CNS myelination.

Authors:  Marnie A Preston; Wendy B Macklin
Journal:  Glia       Date:  2014-09-27       Impact factor: 7.452

8.  Generation of myostatin B knockout yellow catfish (Tachysurus fulvidraco) using transcription activator-like effector nucleases.

Authors:  Zhangji Dong; Jiachun Ge; Zhiqiang Xu; Xiaohua Dong; Shasha Cao; Jianlin Pan; Qingshun Zhao
Journal:  Zebrafish       Date:  2014-05-09       Impact factor: 1.985

Review 9.  Recent advances using zebrafish animal models for muscle disease drug discovery.

Authors:  Lisa Maves
Journal:  Expert Opin Drug Discov       Date:  2014-06-14       Impact factor: 6.098

10.  Vegfc acts through ERK to induce sprouting and differentiation of trunk lymphatic progenitors.

Authors:  Masahiro Shin; Ira Male; Timothy J Beane; Jacques A Villefranc; Fatma O Kok; Lihua J Zhu; Nathan D Lawson
Journal:  Development       Date:  2016-09-12       Impact factor: 6.868

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