Literature DB >> 25463439

Movement of elongation factor G between compact and extended conformations.

Enea Salsi1, Elie Farah1, Zoe Netter1, Jillian Dann1, Dmitri N Ermolenko2.   

Abstract

Previous structural studies suggested that ribosomal translocation is accompanied by large interdomain rearrangements of elongation factor G (EF-G). Here, we follow the movement of domain IV of EF-G relative to domain II of EF-G using ensemble and single-molecule Förster resonance energy transfer. Our results indicate that ribosome-free EF-G predominantly adopts a compact conformation that can also, albeit infrequently, transition into a more extended conformation in which domain IV moves away from domain II. By contrast, ribosome-bound EF-G predominantly adopts an extended conformation regardless of whether it is interacting with pretranslocation ribosomes or with posttranslocation ribosomes. Our data suggest that ribosome-bound EF-G may also occasionally sample at least one more compact conformation. GTP hydrolysis catalyzed by EF-G does not affect the relative stability of the observed conformations in ribosome-free and ribosome-bound EF-G. Our data support a model suggesting that, upon binding to a pretranslocation ribosome, EF-G moves from a compact to a more extended conformation. This transition is not coupled to but likely precedes both GTP hydrolysis and mRNA/tRNA translocation.
Copyright © 2014. Published by Elsevier Ltd.

Entities:  

Keywords:  conformational dynamics; ribosome; smFRET; tRNA translocation; viomycin

Mesh:

Substances:

Year:  2014        PMID: 25463439      PMCID: PMC4297505          DOI: 10.1016/j.jmb.2014.11.010

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  54 in total

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Review 2.  The A-Z of bacterial translation inhibitors.

Authors:  Daniel N Wilson
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Nov-Dec       Impact factor: 8.250

3.  Distinguishing between protein dynamics and dye photophysics in single-molecule FRET experiments.

Authors:  Hoi Sung Chung; John M Louis; William A Eaton
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

Review 4.  Structure and dynamics of a processive Brownian motor: the translating ribosome.

Authors:  Joachim Frank; Ruben L Gonzalez
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

5.  Staphylococcus aureus elongation factor G--structure and analysis of a target for fusidic acid.

Authors:  Yang Chen; Ravi Kiran Koripella; Suparna Sanyal; Maria Selmer
Journal:  FEBS J       Date:  2010-08-13       Impact factor: 5.542

Review 6.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

7.  Distinct functions of elongation factor G in ribosome recycling and translocation.

Authors:  Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  RNA       Date:  2009-03-26       Impact factor: 4.942

8.  The pretranslocation ribosome is targeted by GTP-bound EF-G in partially activated form.

Authors:  Vasili Hauryliuk; Vladimir A Mitkevich; Natalia A Eliseeva; Irina Yu Petrushanko; Måns Ehrenberg; Alexander A Makarov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-03       Impact factor: 11.205

9.  Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites.

Authors:  Andreas H Ratje; Justus Loerke; Aleksandra Mikolajka; Matthias Brünner; Peter W Hildebrand; Agata L Starosta; Alexandra Dönhöfer; Sean R Connell; Paola Fucini; Thorsten Mielke; Paul C Whitford; José N Onuchic; Yanan Yu; Karissa Y Sanbonmatsu; Roland K Hartmann; Pawel A Penczek; Daniel N Wilson; Christian M T Spahn
Journal:  Nature       Date:  2010-12-02       Impact factor: 49.962

10.  The structure of the ribosome with elongation factor G trapped in the posttranslocational state.

Authors:  Yong-Gui Gao; Maria Selmer; Christine M Dunham; Albert Weixlbaumer; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2009-10-30       Impact factor: 47.728

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  14 in total

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Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 2.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

3.  Global reprogramming of virulence and antibiotic resistance in Pseudomonas aeruginosa by a single nucleotide polymorphism in elongation factor, fusA1.

Authors:  Eve A Maunders; Rory C Triniman; Joshua Western; Taufiq Rahman; Martin Welch
Journal:  J Biol Chem       Date:  2020-09-17       Impact factor: 5.157

4.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

5.  Ensemble and single-molecule FRET studies of protein synthesis.

Authors:  Wan-Jung C Lai; Dmitri N Ermolenko
Journal:  Methods       Date:  2017-12-13       Impact factor: 3.608

6.  Elongation factor G initiates translocation through a power stroke.

Authors:  Chunlai Chen; Xiaonan Cui; John F Beausang; Haibo Zhang; Ian Farrell; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-16       Impact factor: 11.205

7.  Structural basis for ribosome recycling by RRF and tRNA.

Authors:  Dejian Zhou; Takehito Tanzawa; Jinzhong Lin; Matthieu G Gagnon
Journal:  Nat Struct Mol Biol       Date:  2019-12-23       Impact factor: 18.361

Review 8.  Structural Insights into tRNA Dynamics on the Ribosome.

Authors:  Xabier Agirrezabala; Mikel Valle
Journal:  Int J Mol Sci       Date:  2015-04-30       Impact factor: 5.923

Review 9.  Structural insights into ribosome translocation.

Authors:  Clarence Ling; Dmitri N Ermolenko
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-04-27       Impact factor: 9.957

10.  Kinetics of initiating polypeptide elongation in an IRES-dependent system.

Authors:  Haibo Zhang; Martin Y Ng; Yuanwei Chen; Barry S Cooperman
Journal:  Elife       Date:  2016-06-02       Impact factor: 8.140

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