Literature DB >> 19173642

Ribosomal translocation: one step closer to the molecular mechanism.

Shinichiro Shoji1, Sarah E Walker, Kurt Fredrick.   

Abstract

Protein synthesis occurs in ribosomes, the targets of numerous antibiotics. How these large and complex machines read and move along mRNA have proven to be challenging questions. In this Review, we focus on translocation, the last step of the elongation cycle in which movement of tRNA and mRNA is catalyzed by elongation factor G. Translocation entails large-scale movements of the tRNAs and conformational changes in the ribosome that require numerous tertiary contacts to be disrupted and reformed. We highlight recent progress toward elucidating the molecular basis of translocation and how various antibiotics influence tRNA-mRNA movement.

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Year:  2009        PMID: 19173642      PMCID: PMC3010847          DOI: 10.1021/cb8002946

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  126 in total

1.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

2.  Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.

Authors:  Laura Lancaster; Harry F Noller
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

Review 3.  Conserved P-loop GTPases of unknown function in bacteria: an emerging and vital ensemble in bacterial physiology.

Authors:  Eric D Brown
Journal:  Biochem Cell Biol       Date:  2005-12       Impact factor: 3.626

4.  The hybrid state of tRNA binding is an authentic translation elongation intermediate.

Authors:  Silke Dorner; Julie L Brunelle; Divya Sharma; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2006-02-26       Impact factor: 15.369

5.  Identification of two distinct hybrid state intermediates on the ribosome.

Authors:  James B Munro; Roger B Altman; Nathan O'Connor; Scott C Blanchard
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

6.  Kinetically competent intermediates in the translocation step of protein synthesis.

Authors:  Dongli Pan; Stanislav V Kirillov; Barry S Cooperman
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

7.  Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Authors:  Andreas Savelsbergh; Dagmar Mohr; Ute Kothe; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  EMBO J       Date:  2005-11-17       Impact factor: 11.598

8.  Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli.

Authors:  Nimo M Abdi; Kurt Fredrick
Journal:  RNA       Date:  2005-09-21       Impact factor: 4.942

9.  Capreomycin binds across the ribosomal subunit interface using tlyA-encoded 2'-O-methylations in 16S and 23S rRNAs.

Authors:  Shanna K Johansen; Courtney E Maus; Bonnie B Plikaytis; Stephen Douthwaite
Journal:  Mol Cell       Date:  2006-07-21       Impact factor: 17.970

10.  Function of the ribosomal E-site: a mutagenesis study.

Authors:  Petr V Sergiev; Dmitry V Lesnyak; Sergey V Kiparisov; Dmitry E Burakovsky; Andrei A Leonov; Alexey A Bogdanov; Richard Brimacombe; Olga A Dontsova
Journal:  Nucleic Acids Res       Date:  2005-10-20       Impact factor: 16.971

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  45 in total

Review 1.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

2.  Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study.

Authors:  Felix Weis; Patrick Bron; Jean-Paul Rolland; Daniel Thomas; Brice Felden; Reynald Gillet
Journal:  RNA       Date:  2009-12-28       Impact factor: 4.942

3.  A fast dynamic mode of the EF-G-bound ribosome.

Authors:  James B Munro; Roger B Altman; Chang-Shung Tung; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

4.  Spontaneous formation of the unlocked state of the ribosome is a multistep process.

Authors:  James B Munro; Roger B Altman; Chang-Shung Tung; Jamie H D Cate; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

5.  Conformational changes in switch I of EF-G drive its directional cycling on and off the ribosome.

Authors:  Cristina Ticu; Roxana Nechifor; Boray Nguyen; Melanie Desrosiers; Kevin S Wilson
Journal:  EMBO J       Date:  2009-06-18       Impact factor: 11.598

Review 6.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

Review 7.  Biological mechanisms, one molecule at a time.

Authors:  Ignacio Tinoco; Ruben L Gonzalez
Journal:  Genes Dev       Date:  2011-06-15       Impact factor: 11.361

8.  Translation and folding of single proteins in real time.

Authors:  Florian Wruck; Alexandros Katranidis; Knud H Nierhaus; Georg Büldt; Martin Hegner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

9.  Correlated conformational events in EF-G and the ribosome regulate translocation.

Authors:  James B Munro; Michael R Wasserman; Roger B Altman; Leyi Wang; Scott C Blanchard
Journal:  Nat Struct Mol Biol       Date:  2010-11-07       Impact factor: 15.369

10.  Contribution of ribosomal residues to P-site tRNA binding.

Authors:  Shinichiro Shoji; Nimo M Abdi; Ralf Bundschuh; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

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