Literature DB >> 25457165

RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Raymond H J Staals1, Yifan Zhu2, David W Taylor3, Jack E Kornfeld3, Kundan Sharma4, Arjan Barendregt5, Jasper J Koehorst6, Marnix Vlot2, Nirajan Neupane2, Koen Varossieau2, Keiko Sakamoto7, Takehiro Suzuki8, Naoshi Dohmae8, Shigeyuki Yokoyama9, Peter J Schaap6, Henning Urlaub10, Albert J R Heck5, Eva Nogales11, Jennifer A Doudna12, Akeo Shinkai13, John van der Oost14.   

Abstract

CRISPR-Cas is a prokaryotic adaptive immune system that provides sequence-specific defense against foreign nucleic acids. Here we report the structure and function of the effector complex of the Type III-A CRISPR-Cas system of Thermus thermophilus: the Csm complex (TtCsm). TtCsm is composed of five different protein subunits (Csm1-Csm5) with an uneven stoichiometry and a single crRNA of variable size (35-53 nt). The TtCsm crRNA content is similar to the Type III-B Cmr complex, indicating that crRNAs are shared among different subtypes. A negative stain EM structure of the TtCsm complex exhibits the characteristic architecture of Type I and Type III CRISPR-associated ribonucleoprotein complexes. crRNA-protein crosslinking studies show extensive contacts between the Csm3 backbone and the bound crRNA. We show that, like TtCmr, TtCsm cleaves complementary target RNAs at multiple sites. Unlike Type I complexes, interference by TtCsm does not proceed via initial base pairing by a seed sequence.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25457165      PMCID: PMC4342149          DOI: 10.1016/j.molcel.2014.10.005

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  60 in total

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Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

2.  A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs.

Authors:  Asma Hatoum-Aslan; Poulami Samai; Inbal Maniv; Wenyan Jiang; Luciano A Marraffini
Journal:  J Biol Chem       Date:  2013-08-09       Impact factor: 5.157

3.  Structure of an RNA silencing complex of the CRISPR-Cas immune system.

Authors:  Michael Spilman; Alexis Cocozaki; Caryn Hale; Yaming Shao; Nancy Ramia; Rebeca Terns; Michael Terns; Hong Li; Scott Stagg
Journal:  Mol Cell       Date:  2013-10-10       Impact factor: 17.970

Review 4.  Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

Authors:  John van der Oost; Edze R Westra; Ryan N Jackson; Blake Wiedenheft
Journal:  Nat Rev Microbiol       Date:  2014-06-09       Impact factor: 60.633

Review 5.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

6.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

7.  Structures of the RNA-guided surveillance complex from a bacterial immune system.

Authors:  Blake Wiedenheft; Gabriel C Lander; Kaihong Zhou; Matthijs M Jore; Stan J J Brouns; John van der Oost; Jennifer A Doudna; Eva Nogales
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease.

Authors:  Nancy F Ramia; Li Tang; Alexis I Cocozaki; Hong Li
Journal:  Nucleic Acids Res       Date:  2013-10-10       Impact factor: 16.971

10.  Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system.

Authors:  Zihni Arslan; Veronica Hermanns; Reinhild Wurm; Rolf Wagner; Ümit Pul
Journal:  Nucleic Acids Res       Date:  2014-06-11       Impact factor: 16.971

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  118 in total

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Authors:  Luciano A Marraffini
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

2.  Purification, crystallization, crystallographic analysis and phasing of the CRISPR-associated protein Csm2 from Thermotoga maritima.

Authors:  Gloria Gallo; Gilles Augusto; Giulliana Rangel; André Zelanis; Marcelo A Mori; Cláudia Barbosa Campos; Martin Würtele
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

3.  Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity.

Authors:  Ning Jia; Charlie Y Mo; Chongyuan Wang; Edward T Eng; Luciano A Marraffini; Dinshaw J Patel
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

4.  Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference.

Authors:  Lilan You; Jun Ma; Jiuyu Wang; Daria Artamonova; Min Wang; Liang Liu; Hua Xiang; Konstantin Severinov; Xinzheng Zhang; Yanli Wang
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

5.  Dynamics of Cas10 Govern Discrimination between Self and Non-self in Type III CRISPR-Cas Immunity.

Authors:  Ling Wang; Charlie Y Mo; Michael R Wasserman; Jakob T Rostøl; Luciano A Marraffini; Shixin Liu
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

6.  Characterization of a novel type III CRISPR-Cas effector provides new insights into the allosteric activation and suppression of the Cas10 DNase.

Authors:  Jinzhong Lin; Mingxia Feng; Heping Zhang; Qunxin She
Journal:  Cell Discov       Date:  2020-05-12       Impact factor: 10.849

Review 7.  Structure Principles of CRISPR-Cas Surveillance and Effector Complexes.

Authors:  Tsz Kin Martin Tsui; Hong Li
Journal:  Annu Rev Biophys       Date:  2015-05-27       Impact factor: 12.981

Review 8.  The emerging role of native mass spectrometry in characterizing the structure and dynamics of macromolecular complexes.

Authors:  Elisabetta Boeri Erba; Carlo Petosa
Journal:  Protein Sci       Date:  2015-03-31       Impact factor: 6.725

9.  Multiple origins of reverse transcriptases linked to CRISPR-Cas systems.

Authors:  Nicolás Toro; Francisco Martínez-Abarca; Mario Rodríguez Mestre; Alejandro González-Delgado
Journal:  RNA Biol       Date:  2019-07-11       Impact factor: 4.652

Review 10.  Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome.

Authors:  Gregory W Goldberg; Luciano A Marraffini
Journal:  Nat Rev Immunol       Date:  2015-11       Impact factor: 53.106

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