Literature DB >> 26457510

Purification, crystallization, crystallographic analysis and phasing of the CRISPR-associated protein Csm2 from Thermotoga maritima.

Gloria Gallo1, Gilles Augusto1, Giulliana Rangel1, André Zelanis1, Marcelo A Mori2, Cláudia Barbosa Campos1, Martin Würtele1.   

Abstract

The clusters of regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated proteins (Cas) system consists of an intriguing machinery of proteins that confer bacteria and archaea with immunity against phages and plasmids via an RNA-guided interference mechanism. Here, the cloning, recombinant expression in Escherichia coli BL21 (DE3), purification, crystallization and preliminary X-ray diffraction analysis of Csm2 from Thermotoga maritima are reported. Csm2 is thought to be a component of an important protein complex of the type IIIA CRISPR-Cas system, which is involved in the CRISPR-Cas RNA-guided interference pathway. The structure of Csm2 was solved via cadmium single-wavelength anomalous diffraction (Cd-SAD) phasing. Owing to its involvement in the CRISPR-Cas system, the crystal structure of this protein could be of importance in elucidating the mechanism of type IIIA CRISPR-Cas systems in bacteria and archaea.

Entities:  

Keywords:  CRISPR–Cas; Csm2; RNA-guided interference; Thermotoga maritima

Mesh:

Substances:

Year:  2015        PMID: 26457510      PMCID: PMC4601583          DOI: 10.1107/S2053230X15014776

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  39 in total

1.  Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog.

Authors:  Takuo Osawa; Hideko Inanaga; Chikara Sato; Tomoyuki Numata
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

2.  Structural analysis of actinidin and a comparison of cadmium and sulfur anomalous signals from actinidin crystals measured using in-house copper- and chromium-anode X-ray sources.

Authors:  Manickam Yogavel; Nirmal Nithya; Atsuo Suzuki; Yasuo Sugiyama; Takashi Yamane; Devadasan Velmurugan; Amit Sharma
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-11-20

3.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Product release rather than chelation determines metal specificity for ferrochelatase.

Authors:  Amy E Medlock; Michael Carter; Tamara A Dailey; Harry A Dailey; William N Lanzilotta
Journal:  J Mol Biol       Date:  2009-08-22       Impact factor: 5.469

5.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

6.  Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense.

Authors:  Blake Wiedenheft; Kaihong Zhou; Martin Jinek; Scott M Coyle; Wendy Ma; Jennifer A Doudna
Journal:  Structure       Date:  2009-06-10       Impact factor: 5.006

7.  Structures of the RNA-guided surveillance complex from a bacterial immune system.

Authors:  Blake Wiedenheft; Gabriel C Lander; Kaihong Zhou; Matthijs M Jore; Stan J J Brouns; John van der Oost; Jennifer A Doudna; Eva Nogales
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

8.  RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Authors:  Raymond H J Staals; Yifan Zhu; David W Taylor; Jack E Kornfeld; Kundan Sharma; Arjan Barendregt; Jasper J Koehorst; Marnix Vlot; Nirajan Neupane; Koen Varossieau; Keiko Sakamoto; Takehiro Suzuki; Naoshi Dohmae; Shigeyuki Yokoyama; Peter J Schaap; Henning Urlaub; Albert J R Heck; Eva Nogales; Jennifer A Doudna; Akeo Shinkai; John van der Oost
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

9.  Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems.

Authors:  Kira S Makarova; L Aravind; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2011-07-14       Impact factor: 4.540

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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