Literature DB >> 25676284

The emerging role of native mass spectrometry in characterizing the structure and dynamics of macromolecular complexes.

Elisabetta Boeri Erba1,2,3, Carlo Petosa1,2,3.   

Abstract

Mass spectrometry (MS) is a powerful tool for determining the mass of biomolecules with high accuracy and sensitivity. MS performed under so-called "native conditions" (native MS) can be used to determine the mass of biomolecules that associate noncovalently. Here we review the application of native MS to the study of protein-ligand interactions and its emerging role in elucidating the structure of macromolecular assemblies, including soluble and membrane protein complexes. Moreover, we discuss strategies aimed at determining the stoichiometry and topology of subunits by inducing partial dissociation of the holo-complex. We also survey recent developments in "native top-down MS", an approach based on Fourier Transform MS, whereby covalent bonds are broken without disrupting non-covalent interactions. Given recent progress, native MS is anticipated to play an increasingly important role for researchers interested in the structure of macromolecular complexes.
© 2015 The Protein Society.

Keywords:  2D interaction map; macromolecular complexes; native mass spectrometry (MS); protein−ligand interactions; stoichiometry; top-down MS

Mesh:

Substances:

Year:  2015        PMID: 25676284      PMCID: PMC4534170          DOI: 10.1002/pro.2661

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  156 in total

1.  Weighing naked proteins: practical, high-accuracy mass measurement of peptides and proteins.

Authors:  B T Chait; S B Kent
Journal:  Science       Date:  1992-09-25       Impact factor: 47.728

2.  High-efficiency nano- and micro-HPLC--high-resolution Orbitrap-MS platform for top-down proteomics.

Authors:  Jens Mohr; Remco Swart; Martin Samonig; Günter Böhm; Christian G Huber
Journal:  Proteomics       Date:  2010-10       Impact factor: 3.984

Review 3.  Achievements and perspectives of top-down proteomics.

Authors:  Andrea Armirotti; Gianluca Damonte
Journal:  Proteomics       Date:  2010-10       Impact factor: 3.984

4.  Tandem mass spectrometry reveals the quaternary organization of macromolecular assemblies.

Authors:  Justin L P Benesch; J Andrew Aquilina; Brandon T Ruotolo; Frank Sobott; Carol V Robinson
Journal:  Chem Biol       Date:  2006-06

5.  Mass spectrometry--a useful tool for the protein X-ray crystallographer and NMR spectroscopist.

Authors:  B T Chait
Journal:  Structure       Date:  1994-06-15       Impact factor: 5.006

6.  Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator.

Authors:  H Lebrette; E Borezée-Durant; L Martin; P Richaud; E Boeri Erba; C Cavazza
Journal:  Metallomics       Date:  2015-04       Impact factor: 4.526

7.  Architecture of a dsDNA viral capsid in complex with its maturation protease.

Authors:  David Veesler; Reza Khayat; Srinath Krishnamurthy; Joost Snijder; Rick K Huang; Albert J R Heck; Ganesh S Anand; John E Johnson
Journal:  Structure       Date:  2013-12-19       Impact factor: 5.006

8.  Small molecules inhibit the interaction of Nrf2 and the Keap1 Kelch domain through a non-covalent mechanism.

Authors:  Douglas Marcotte; Weike Zeng; Jean-Christophe Hus; Andres McKenzie; Cathy Hession; Ping Jin; Chris Bergeron; Alexey Lugovskoy; Istvan Enyedy; Hernan Cuervo; Deping Wang; Cédric Atmanene; Dominique Roecklin; Malgorzata Vecchi; Valérie Vivat; Joachim Kraemer; Dirk Winkler; Victor Hong; Jianhua Chao; Matvey Lukashev; Laura Silvian
Journal:  Bioorg Med Chem       Date:  2013-04-19       Impact factor: 3.641

9.  RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Authors:  Raymond H J Staals; Yifan Zhu; David W Taylor; Jack E Kornfeld; Kundan Sharma; Arjan Barendregt; Jasper J Koehorst; Marnix Vlot; Nirajan Neupane; Koen Varossieau; Keiko Sakamoto; Takehiro Suzuki; Naoshi Dohmae; Shigeyuki Yokoyama; Peter J Schaap; Henning Urlaub; Albert J R Heck; Eva Nogales; Jennifer A Doudna; Akeo Shinkai; John van der Oost
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

10.  Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions.

Authors:  Nelson P Barrera; Shoshanna C Isaacson; Min Zhou; Vassiliy N Bavro; Alex Welch; Theresia A Schaedler; Markus A Seeger; Ricardo Núñez Miguel; Vladimir M Korkhov; Hendrik W van Veen; Henrietta Venter; Adrian R Walmsley; Christopher G Tate; Carol V Robinson
Journal:  Nat Methods       Date:  2009-07-05       Impact factor: 28.547

View more
  35 in total

1.  UV-POSIT: Web-Based Tools for Rapid and Facile Structural Interpretation of Ultraviolet Photodissociation (UVPD) Mass Spectra.

Authors:  Jake Rosenberg; W Ryan Parker; Michael B Cammarata; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2018-04-06       Impact factor: 3.109

Review 2.  Fast photochemical oxidation of proteins (FPOP): A powerful mass spectrometry-based structural proteomics tool.

Authors:  Danté T Johnson; Luciano H Di Stefano; Lisa M Jones
Journal:  J Biol Chem       Date:  2019-07-01       Impact factor: 5.157

3.  Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein.

Authors:  Eduard Baquero; Aurélie A Albertini; Hélène Raux; Abbas Abou-Hamdan; Elisabetta Boeri-Erba; Malika Ouldali; Linda Buonocore; John K Rose; Jean Lepault; Stéphane Bressanelli; Yves Gaudin
Journal:  EMBO J       Date:  2017-02-10       Impact factor: 11.598

4.  Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features.

Authors:  Ziyun Ding; Daisuke Kihara
Journal:  Curr Protoc Protein Sci       Date:  2018-06-21

5.  Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry.

Authors:  Arseniy M Belov; Rosa Viner; Marcia R Santos; David M Horn; Marshall Bern; Barry L Karger; Alexander R Ivanov
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-05       Impact factor: 3.109

6.  Mass spectrometry: Raw protein from the top down.

Authors:  Kathrin Breuker
Journal:  Nat Chem       Date:  2018-01-23       Impact factor: 24.427

7.  Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules.

Authors:  Jennifer S Brodbelt; Lindsay J Morrison; Inês Santos
Journal:  Chem Rev       Date:  2019-12-18       Impact factor: 60.622

8.  A Molecular Mechanism for Nonphotochemical Quenching in Cyanobacteria.

Authors:  Yue Lu; Haijun Liu; Rafael Saer; Veronica L Li; Hao Zhang; Liuqing Shi; Carrie Goodson; Michael L Gross; Robert E Blankenship
Journal:  Biochemistry       Date:  2017-05-25       Impact factor: 3.162

Review 9.  Evolution of Structural Biology through the Lens of Mass Spectrometry.

Authors:  Upneet Kaur; Danté T Johnson; Emily E Chea; Daniel J Deredge; Jessica A Espino; Lisa M Jones
Journal:  Anal Chem       Date:  2018-12-06       Impact factor: 6.986

10.  Characterizing the general chelating affinity of serum protein fetuin for lanthanides.

Authors:  Roger M Pallares; Nagender R Panyala; Manuel Sturzbecher-Hoehne; Marie-Claire Illy; Rebecca J Abergel
Journal:  J Biol Inorg Chem       Date:  2020-09-10       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.