Literature DB >> 26432244

CRISPR-Cas immunity in prokaryotes.

Luciano A Marraffini1.   

Abstract

Prokaryotic organisms are threatened by a large array of viruses and have developed numerous defence strategies. Among these, only clustered, regularly interspaced short palindromic repeat (CRISPR)-Cas systems provide adaptive immunity against foreign elements. Upon viral injection, a small sequence of the viral genome, known as a spacer, is integrated into the CRISPR locus to immunize the host cell. Spacers are transcribed into small RNA guides that direct the cleavage of the viral DNA by Cas nucleases. Immunization through spacer acquisition enables a unique form of evolution whereby a population not only rapidly acquires resistance to its predators but also passes this resistance mechanism vertically to its progeny.

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Year:  2015        PMID: 26432244     DOI: 10.1038/nature15386

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  116 in total

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Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

2.  Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli.

Authors:  Moran G Goren; Ido Yosef; Oren Auster; Udi Qimron
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

Review 3.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

4.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

5.  Characteristics of Chi distribution on different bacterial genomes.

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Journal:  Res Microbiol       Date:  1999 Nov-Dec       Impact factor: 3.992

6.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

7.  RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Authors:  Raymond H J Staals; Yifan Zhu; David W Taylor; Jack E Kornfeld; Kundan Sharma; Arjan Barendregt; Jasper J Koehorst; Marnix Vlot; Nirajan Neupane; Koen Varossieau; Keiko Sakamoto; Takehiro Suzuki; Naoshi Dohmae; Shigeyuki Yokoyama; Peter J Schaap; Henning Urlaub; Albert J R Heck; Eva Nogales; Jennifer A Doudna; Akeo Shinkai; John van der Oost
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

8.  CRISPR interference directs strand specific spacer acquisition.

Authors:  Daan C Swarts; Cas Mosterd; Mark W J van Passel; Stan J J Brouns
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

9.  Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system.

Authors:  Zihni Arslan; Veronica Hermanns; Reinhild Wurm; Rolf Wagner; Ümit Pul
Journal:  Nucleic Acids Res       Date:  2014-06-11       Impact factor: 16.971

10.  Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials.

Authors:  David Bikard; Chad W Euler; Wenyan Jiang; Philip M Nussenzweig; Gregory W Goldberg; Xavier Duportet; Vincent A Fischetti; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2014-10-05       Impact factor: 54.908

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  269 in total

1.  Design and Evaluation of Guide RNA Transcripts with a 3'-Terminal HDV Ribozyme to Enhance CRISPR-Based Gene Inactivation.

Authors:  Ben Berkhout; Zongliang Gao; Elena Herrera-Carrillo
Journal:  Methods Mol Biol       Date:  2021

2.  Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity.

Authors:  Ning Jia; Charlie Y Mo; Chongyuan Wang; Edward T Eng; Luciano A Marraffini; Dinshaw J Patel
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

3.  Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference.

Authors:  Lilan You; Jun Ma; Jiuyu Wang; Daria Artamonova; Min Wang; Liang Liu; Hua Xiang; Konstantin Severinov; Xinzheng Zhang; Yanli Wang
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

4.  Inhibition of CRISPR-Cas9 with Bacteriophage Proteins.

Authors:  Benjamin J Rauch; Melanie R Silvis; Judd F Hultquist; Christopher S Waters; Michael J McGregor; Nevan J Krogan; Joseph Bondy-Denomy
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

5.  RNA-guided DNA insertion with CRISPR-associated transposases.

Authors:  Jonathan Strecker; Alim Ladha; Zachary Gardner; Jonathan L Schmid-Burgk; Kira S Makarova; Eugene V Koonin; Feng Zhang
Journal:  Science       Date:  2019-06-06       Impact factor: 47.728

Review 6.  A CRISPR Path to Engineering New Genetic Mouse Models for Cardiovascular Research.

Authors:  Joseph M Miano; Qiuyu Martin Zhu; Charles J Lowenstein
Journal:  Arterioscler Thromb Vasc Biol       Date:  2016-04-21       Impact factor: 8.311

7.  Structural basis of Type IV CRISPR RNA biogenesis by a Cas6 endoribonuclease.

Authors:  Hannah N Taylor; Emily E Warner; Matthew J Armbrust; Valerie M Crowley; Keith J Olsen; Ryan N Jackson
Journal:  RNA Biol       Date:  2019-06-28       Impact factor: 4.652

8.  CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.

Authors:  Narin S Tangprasertchai; Rosa Di Felice; Xiaojun Zhang; Ian M Slaymaker; Carolina Vazquez Reyes; Wei Jiang; Remo Rohs; Peter Z Qin
Journal:  ACS Chem Biol       Date:  2017-05-03       Impact factor: 5.100

9.  Identification of Functions Affecting Predator-Prey Interactions between Myxococcus xanthus and Bacillus subtilis.

Authors:  Susanne Müller; Sarah N Strack; Sarah E Ryan; Mary Shawgo; Abigail Walling; Susanna Harris; Chris Chambers; Jennifer Boddicker; John R Kirby
Journal:  J Bacteriol       Date:  2016-11-18       Impact factor: 3.490

10.  Understanding the Streptococcus mutans Cid/Lrg System through CidB Function.

Authors:  Sang-Joon Ahn; Kelly C Rice
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

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