Literature DB >> 26048003

Structure Principles of CRISPR-Cas Surveillance and Effector Complexes.

Tsz Kin Martin Tsui1, Hong Li.   

Abstract

The pathway of CRISPR-<span class="Chemical">Cas immunity redefines the roles of RNA in the flow of genetic information and ignites excitement for next-generation gene therapy tools. CRISPR-<span class="Chemical">Cas machineries offer a fascinating set of new enzyme assemblies from which one can learn principles of molecular interactions and chemical activities. The interference step of the CRISPR-Cas immunity pathway congregates proteins, RNA, and DNA into a single molecular entity that selectively destroys invading nucleic acids. Although much remains to be discovered, a picture of how the interference process takes place is emerging. This review focuses on the current structural data for the three known types of RNA-guided nucleic acid interference mechanisms. In it, we describe key features of individual complexes and we emphasize comparisons across types and along functional stages. We aim to provide readers with a set of core principles learned from the three types of interference complexes and a deep appreciation of the diversity among them.

Entities:  

Keywords:  DNA interference; RNA silencing; prokaryote immunity; ribonucleoprotein particles

Mesh:

Substances:

Year:  2015        PMID: 26048003      PMCID: PMC5198722          DOI: 10.1146/annurev-biophys-060414-033939

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  96 in total

Review 1.  Homing endonuclease structure and function.

Authors:  Barry L Stoddard
Journal:  Q Rev Biophys       Date:  2005-12-09       Impact factor: 5.318

2.  Structure of an RNA silencing complex of the CRISPR-Cas immune system.

Authors:  Michael Spilman; Alexis Cocozaki; Caryn Hale; Yaming Shao; Nancy Ramia; Rebeca Terns; Michael Terns; Hong Li; Scott Stagg
Journal:  Mol Cell       Date:  2013-10-10       Impact factor: 17.970

3.  Structural Principles of CRISPR RNA Processing.

Authors:  Hong Li
Journal:  Structure       Date:  2014-11-26       Impact factor: 5.006

Review 4.  New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics.

Authors:  Pascal Hols; Frédéric Hancy; Laetitia Fontaine; Benoît Grossiord; Deborah Prozzi; Nathalie Leblond-Bourget; Bernard Decaris; Alexander Bolotin; Christine Delorme; S Dusko Ehrlich; Eric Guédon; Véronique Monnet; Pierre Renault; Michiel Kleerebezem
Journal:  FEMS Microbiol Rev       Date:  2005-08       Impact factor: 16.408

Review 5.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

6.  Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system.

Authors:  Ki Hyun Nam; Charles Haitjema; Xueqi Liu; Fran Ding; Hongwei Wang; Matthew P DeLisa; Ailong Ke
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

7.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

8.  Structures of the RNA-guided surveillance complex from a bacterial immune system.

Authors:  Blake Wiedenheft; Gabriel C Lander; Kaihong Zhou; Matthijs M Jore; Stan J J Brouns; John van der Oost; Jennifer A Doudna; Eva Nogales
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

9.  Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Authors:  Rachel E Haurwitz; Martin Jinek; Blake Wiedenheft; Kaihong Zhou; Jennifer A Doudna
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

10.  RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Authors:  Raymond H J Staals; Yifan Zhu; David W Taylor; Jack E Kornfeld; Kundan Sharma; Arjan Barendregt; Jasper J Koehorst; Marnix Vlot; Nirajan Neupane; Koen Varossieau; Keiko Sakamoto; Takehiro Suzuki; Naoshi Dohmae; Shigeyuki Yokoyama; Peter J Schaap; Henning Urlaub; Albert J R Heck; Eva Nogales; Jennifer A Doudna; Akeo Shinkai; John van der Oost
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

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  9 in total

1.  The Impact of DNA Topology and Guide Length on Target Selection by a Cytosine-Specific Cas9.

Authors:  Tsz Kin Martin Tsui; Travis H Hand; Emily C Duboy; Hong Li
Journal:  ACS Synth Biol       Date:  2017-03-20       Impact factor: 5.110

2.  Recruitment of CRISPR-Cas systems by Tn7-like transposons.

Authors:  Joseph E Peters; Kira S Makarova; Sergey Shmakov; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

Review 3.  Casposons: mobile genetic elements that gave rise to the CRISPR-Cas adaptation machinery.

Authors:  Mart Krupovic; Pierre Béguin; Eugene V Koonin
Journal:  Curr Opin Microbiol       Date:  2017-05-01       Impact factor: 7.934

4.  Directed evolution studies of a thermophilic Type II-C Cas9.

Authors:  Travis H Hand; Anuska Das; Hong Li
Journal:  Methods Enzymol       Date:  2018-12-28       Impact factor: 1.600

5.  Phosphate Lock Residues of Acidothermus cellulolyticus Cas9 Are Critical to Its Substrate Specificity.

Authors:  Travis H Hand; Anuska Das; Mitchell O Roth; Chardasia L Smith; Uriel L Jean-Baptiste; Hong Li
Journal:  ACS Synth Biol       Date:  2018-12-03       Impact factor: 5.110

6.  Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli.

Authors:  Paul B G van Erp; Ryan N Jackson; Joshua Carter; Sarah M Golden; Scott Bailey; Blake Wiedenheft
Journal:  Nucleic Acids Res       Date:  2015-08-03       Impact factor: 16.971

7.  DNA targeting by the type I-G and type I-A CRISPR-Cas systems of Pyrococcus furiosus.

Authors:  Joshua Elmore; Trace Deighan; Jan Westpheling; Rebecca M Terns; Michael P Terns
Journal:  Nucleic Acids Res       Date:  2015-10-30       Impact factor: 16.971

Review 8.  Structural and dynamic views of the CRISPR-Cas system at the single-molecule level.

Authors:  Seung Hwan Lee; Sangsu Bae
Journal:  BMB Rep       Date:  2016-04       Impact factor: 4.778

Review 9.  RNA Interference in the Age of CRISPR: Will CRISPR Interfere with RNAi?

Authors:  Unnikrishnan Unniyampurath; Rajendra Pilankatta; Manoj N Krishnan
Journal:  Int J Mol Sci       Date:  2016-02-26       Impact factor: 5.923

  9 in total

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