Literature DB >> 24909109

Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

John van der Oost1, Edze R Westra2, Ryan N Jackson3, Blake Wiedenheft3.   

Abstract

Bacteria and archaea have evolved sophisticated adaptive immune systems, known as CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated proteins) systems, which target and inactivate invading viruses and plasmids. Immunity is acquired by integrating short fragments of foreign DNA into CRISPR loci, and following transcription and processing of these loci, the CRISPR RNAs (crRNAs) guide the Cas proteins to complementary invading nucleic acid, which results in target interference. In this Review, we summarize the recent structural and biochemical insights that have been gained for the three major types of CRISPR-Cas systems, which together provide a detailed molecular understanding of the unique and conserved mechanisms of RNA-guided adaptive immunity in bacteria and archaea.

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Year:  2014        PMID: 24909109      PMCID: PMC4225775          DOI: 10.1038/nrmicro3279

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  128 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

Review 2.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

3.  Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Gang Sheng; Hongtu Zhao; Jiuyu Wang; Yu Rao; Wenwen Tian; Daan C Swarts; John van der Oost; Dinshaw J Patel; Yanli Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-27       Impact factor: 11.205

Review 4.  CRISPR-based adaptive and heritable immunity in prokaryotes.

Authors:  John van der Oost; Matthijs M Jore; Edze R Westra; Magnus Lundgren; Stan J J Brouns
Journal:  Trends Biochem Sci       Date:  2009-07-29       Impact factor: 13.807

5.  Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum.

Authors:  Rita Przybilski; Corinna Richter; Tamzin Gristwood; James S Clulow; Reuben B Vercoe; Peter C Fineran
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

6.  Structure of an RNA silencing complex of the CRISPR-Cas immune system.

Authors:  Michael Spilman; Alexis Cocozaki; Caryn Hale; Yaming Shao; Nancy Ramia; Rebeca Terns; Michael Terns; Hong Li; Scott Stagg
Journal:  Mol Cell       Date:  2013-10-10       Impact factor: 17.970

Review 7.  Planting the seed: target recognition of short guide RNAs.

Authors:  Tim Künne; Daan C Swarts; Stan J J Brouns
Journal:  Trends Microbiol       Date:  2014-01-14       Impact factor: 17.079

8.  Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system.

Authors:  Ki Hyun Nam; Charles Haitjema; Xueqi Liu; Fran Ding; Hongwei Wang; Matthew P DeLisa; Ailong Ke
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

9.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

10.  CRISPR interference directs strand specific spacer acquisition.

Authors:  Daan C Swarts; Cas Mosterd; Mark W J van Passel; Stan J J Brouns
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

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  290 in total

1.  The iCRISPR platform for rapid genome editing in human pluripotent stem cells.

Authors:  Zengrong Zhu; Federico González; Danwei Huangfu
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Authors:  Christine L Sun; Brian C Thomas; Rodolphe Barrangou; Jillian F Banfield
Journal:  ISME J       Date:  2015-09-22       Impact factor: 10.302

Review 3.  Combining CRISPR/Cas9 and rAAV Templates for Efficient Gene Editing.

Authors:  Manuel Kaulich; Steven F Dowdy
Journal:  Nucleic Acid Ther       Date:  2015-11-05       Impact factor: 5.486

Review 4.  Genome editing revolutionize the creation of genetically modified pigs for modeling human diseases.

Authors:  Jing Yao; Jiaojiao Huang; Jianguo Zhao
Journal:  Hum Genet       Date:  2016-07-18       Impact factor: 4.132

5.  Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity.

Authors:  Ning Jia; Charlie Y Mo; Chongyuan Wang; Edward T Eng; Luciano A Marraffini; Dinshaw J Patel
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

6.  Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors.

Authors:  Silvana Konermann; Peter Lotfy; Nicholas J Brideau; Jennifer Oki; Maxim N Shokhirev; Patrick D Hsu
Journal:  Cell       Date:  2018-03-15       Impact factor: 41.582

7.  The history and market impact of CRISPR RNA-guided nucleases.

Authors:  Paul Bg van Erp; Gary Bloomer; Royce Wilkinson; Blake Wiedenheft
Journal:  Curr Opin Virol       Date:  2015-04-26       Impact factor: 7.090

8.  Essential structural and functional roles of the Cmr4 subunit in RNA cleavage by the Cmr CRISPR-Cas complex.

Authors:  Nancy F Ramia; Michael Spilman; Li Tang; Yaming Shao; Joshua Elmore; Caryn Hale; Alexis Cocozaki; Nilakshee Bhattacharya; Rebecca M Terns; Michael P Terns; Hong Li; Scott M Stagg
Journal:  Cell Rep       Date:  2014-12-04       Impact factor: 9.423

Review 9.  Evolution of adaptive immunity from transposable elements combined with innate immune systems.

Authors:  Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Genet       Date:  2014-12-09       Impact factor: 53.242

10.  Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection.

Authors:  Alexandra East-Seletsky; Mitchell R O'Connell; Spencer C Knight; David Burstein; Jamie H D Cate; Robert Tjian; Jennifer A Doudna
Journal:  Nature       Date:  2016-09-26       Impact factor: 49.962

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