Literature DB >> 25280899

Genetic networks governing heart development.

Ashley J Waardenberg1, Mirana Ramialison2, Romaric Bouveret3, Richard P Harvey4.   

Abstract

Animal genomes contain a code for construction of the body plan from a fertilized egg. Understanding how genome information is deciphered to create the complex multilayered regulatory systems that drive organismal development, and which become altered in disease, is one of the greatest challenges in the biological sciences. The development of methods that effectively represent and communicate the complexity inherent in gene regulatory networks remains a major barrier. This review introduces the philosophy of systems biology and discusses recent progress in understanding the development of the heart at a systems biology level.
Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID： 25280899      PMCID： PMC4208705          DOI： 10.1101/cshperspect.a013839

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN： 2157-1422            Impact factor:   6.915


  126 in total

Review 1.  Stem cell states, fates, and the rules of attraction.

Authors:  Tariq Enver; Martin Pera; Carsten Peterson; Peter W Andrews
Journal:  Cell Stem Cell       Date:  2009-05-08       Impact factor: 24.633

2.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

Review 3.  Chromatin remodeling in cardiovascular development and physiology.

Authors:  Pei Han; Calvin T Hang; Jin Yang; Ching-Pin Chang
Journal:  Circ Res       Date:  2011-02-04       Impact factor: 17.367

4.  Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Authors:  Stefan Bonn; Robert P Zinzen; Charles Girardot; E Hilary Gustafson; Alexis Perez-Gonzalez; Nicolas Delhomme; Yad Ghavi-Helm; Bartek Wilczyński; Andrew Riddell; Eileen E M Furlong
Journal:  Nat Genet       Date:  2012-01-08       Impact factor: 38.330

5.  Discovery and characterization of chromatin states for systematic annotation of the human genome.

Authors:  Jason Ernst; Manolis Kellis
Journal:  Nat Biotechnol       Date:  2010-07-25       Impact factor: 54.908

6.  Genome-wide discovery of human heart enhancers.

Authors:  Leelavati Narlikar; Noboru J Sakabe; Alexander A Blanski; Fabio E Arimura; John M Westlund; Marcelo A Nobrega; Ivan Ovcharenko
Journal:  Genome Res       Date:  2010-01-14       Impact factor: 9.043

7.  The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Authors:  Phillip Grote; Lars Wittler; David Hendrix; Frederic Koch; Sandra Währisch; Arica Beisaw; Karol Macura; Gaby Bläss; Manolis Kellis; Martin Werber; Bernhard G Herrmann
Journal:  Dev Cell       Date:  2013-01-28       Impact factor: 12.270

8.  Dicer is essential for mouse development.

Authors:  Emily Bernstein; Sang Yong Kim; Michelle A Carmell; Elizabeth P Murchison; Heather Alcorn; Mamie Z Li; Alea A Mills; Stephen J Elledge; Kathryn V Anderson; Gregory J Hannon
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

9.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

Review 10.  Regulation of chromatin structure in the cardiovascular system.

Authors:  Manuel Rosa-Garrido; Elaheh Karbassi; Emma Monte; Thomas M Vondriska
Journal:  Circ J       Date:  2013-04-10       Impact factor: 2.993
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  15 in total

Review 1.  Embryonic heart progenitors and cardiogenesis.

Authors:  Thomas Brade; Luna S Pane; Alessandra Moretti; Kenneth R Chien; Karl-Ludwig Laugwitz
Journal:  Cold Spring Harb Perspect Med       Date:  2013-10-01       Impact factor: 6.915

2.  Antagonistic regulation of cell-cycle and differentiation gene programs in neonatal cardiomyocytes by homologous MEF2 transcription factors.

Authors:  Cody A Desjardins; Francisco J Naya
Journal:  J Biol Chem       Date:  2017-05-04       Impact factor: 5.157

Review 3.  Translational potential of hiPSCs in predictive modeling of heart development and disease.

Authors:  Corrin Mansfield; Ming-Tao Zhao; Madhumita Basu
Journal:  Birth Defects Res       Date:  2022-03-09       Impact factor: 2.661

Review 4.  Development and evolution of the metazoan heart.

Authors:  Robert E Poelmann; Adriana C Gittenberger-de Groot
Journal:  Dev Dyn       Date:  2019-05-20       Impact factor: 3.780

5.  Spatiotemporal Gene Coexpression and Regulation in Mouse Cardiomyocytes of Early Cardiac Morphogenesis.

Authors:  Yang Liu; Pengfei Lu; Yidong Wang; Bernice E Morrow; Bin Zhou; Deyou Zheng
Journal:  J Am Heart Assoc       Date:  2019-07-19       Impact factor: 5.501

Review 6.  Cardiac tissue engineering: state-of-the-art methods and outlook.

Authors:  Anh H Nguyen; Paul Marsh; Lauren Schmiess-Heine; Peter J Burke; Abraham Lee; Juhyun Lee; Hung Cao
Journal:  J Biol Eng       Date:  2019-06-28       Impact factor: 4.355

7.  Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment.

Authors:  Hang Ruan; Yingnan Liao; Zongna Ren; Lin Mao; Fang Yao; Peng Yu; Youqiong Ye; Zhao Zhang; Shengli Li; Hanshi Xu; Jiewei Liu; Lixia Diao; Bingying Zhou; Leng Han; Li Wang
Journal:  BMC Biol       Date:  2019-11-13       Impact factor: 7.431

8.  Many ways to break a heart.

Authors:  Megan Rowton; Ivan P Moskowitz
Journal:  Elife       Date:  2015-08-25       Impact factor: 8.140

9.  Tbx5a lineage tracing shows cardiomyocyte plasticity during zebrafish heart regeneration.

Authors:  Héctor Sánchez-Iranzo; María Galardi-Castilla; Carolina Minguillón; Andrés Sanz-Morejón; Juan Manuel González-Rosa; Anastasia Felker; Alexander Ernst; Gabriela Guzmán-Martínez; Christian Mosimann; Nadia Mercader
Journal:  Nat Commun       Date:  2018-01-30       Impact factor: 14.919

10.  Prediction and validation of protein-protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach.

Authors:  Ashley J Waardenberg; Bernou Homan; Stephanie Mohamed; Richard P Harvey; Romaric Bouveret
Journal:  Open Biol       Date:  2016-09       Impact factor: 6.411
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