Literature DB >> 23369715

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Phillip Grote1, Lars Wittler, David Hendrix, Frederic Koch, Sandra Währisch, Arica Beisaw, Karol Macura, Gaby Bläss, Manolis Kellis, Martin Werber, Bernhard G Herrmann.   

Abstract

The histone-modifying complexes PRC2 and TrxG/MLL play pivotal roles in determining the activation state of genes controlling pluripotency, lineage commitment, and cell differentiation. Long noncoding RNAs (lncRNAs) can bind to either complex, and some have been shown to act as modulators of PRC2 or TrxG/MLL activity. Here we show that the lateral mesoderm-specific lncRNA Fendrr is essential for proper heart and body wall development in the mouse. Embryos lacking Fendrr displayed upregulation of several transcription factors controlling lateral plate or cardiac mesoderm differentiation, accompanied by a drastic reduction in PRC2 occupancy along with decreased H3K27 trimethylation and/or an increase in H3K4 trimethylation at their promoters. Fendrr binds to both the PRC2 and TrxG/MLL complexes, suggesting that it acts as modulator of chromatin signatures that define gene activity. Thus, we identified an lncRNA that plays an essential role in the regulatory networks controlling the fate of lateral mesoderm derivatives.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23369715      PMCID: PMC4149175          DOI: 10.1016/j.devcel.2012.12.012

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  42 in total

1.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  Processing of gene expression data generated by quantitative real-time RT-PCR.

Authors:  Patrick Y Muller; Harald Janovjak; André R Miserez; Zuzana Dobbie
Journal:  Biotechniques       Date:  2002-06       Impact factor: 1.993

3.  Suppression of progenitor differentiation requires the long noncoding RNA ANCR.

Authors:  Markus Kretz; Dan E Webster; Ross J Flockhart; Carolyn S Lee; Ashley Zehnder; Vanessa Lopez-Pajares; Kun Qu; Grace X Y Zheng; Jennifer Chow; Grace E Kim; John L Rinn; Howard Y Chang; Zurab Siprashvili; Paul A Khavari
Journal:  Genes Dev       Date:  2012-02-02       Impact factor: 11.361

4.  The polycomb-group gene Ezh2 is required for early mouse development.

Authors:  D O'Carroll; S Erhardt; M Pagani; S C Barton; M A Surani; T Jenuwein
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

5.  Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation.

Authors:  Wenqian Hu; Bingbing Yuan; Johan Flygare; Harvey F Lodish
Journal:  Genes Dev       Date:  2011-12-08       Impact factor: 11.361

6.  Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.

Authors:  Igor Ulitsky; Alena Shkumatava; Calvin H Jan; Hazel Sive; David P Bartel
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

7.  Mouse Pitx2 deficiency leads to anomalies of the ventral body wall, heart, extra- and periocular mesoderm and right pulmonary isomerism.

Authors:  K Kitamura; H Miura; S Miyagawa-Tomita; M Yanazawa; Y Katoh-Fukui; R Suzuki; H Ohuchi; A Suehiro; Y Motegi; Y Nakahara; S Kondo; M Yokoyama
Journal:  Development       Date:  1999-12       Impact factor: 6.868

8.  Haploinsufficiency of the forkhead gene Foxf1, a target for sonic hedgehog signaling, causes lung and foregut malformations.

Authors:  M Mahlapuu; S Enerbäck; P Carlsson
Journal:  Development       Date:  2001-06       Impact factor: 6.868

9.  The forkhead transcription factor Foxf1 is required for differentiation of extra-embryonic and lateral plate mesoderm.

Authors:  M Mahlapuu; M Ormestad; S Enerbäck; P Carlsson
Journal:  Development       Date:  2001-01       Impact factor: 6.868

10.  Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data.

Authors:  Fabian A Buske; Denis C Bauer; John S Mattick; Timothy L Bailey
Journal:  Genome Res       Date:  2012-05-01       Impact factor: 9.043

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  423 in total

Review 1.  Characters, functions and clinical perspectives of long non-coding RNAs.

Authors:  Ruifang Wu; Yuwen Su; Haijing Wu; Yong Dai; Ming Zhao; Qianjin Lu
Journal:  Mol Genet Genomics       Date:  2016-02-17       Impact factor: 3.291

Review 2.  Long noncoding RNAs in cardiac development and ageing.

Authors:  Yvan Devaux; Jennifer Zangrando; Blanche Schroen; Esther E Creemers; Thierry Pedrazzini; Ching-Pin Chang; Gerald W Dorn; Thomas Thum; Stephane Heymans
Journal:  Nat Rev Cardiol       Date:  2015-04-07       Impact factor: 32.419

Review 3.  Regulation of mammary epithelial cell homeostasis by lncRNAs.

Authors:  Amy N Shore; Jeffrey M Rosen
Journal:  Int J Biochem Cell Biol       Date:  2014-03-26       Impact factor: 5.085

4.  New twists on long noncoding RNAs: from mobile elements to motile cancer cells.

Authors:  Tuan M Nguyen; Sumayya Alchalabi; Adewunmi Oluwatoyosi; Ali S Ropri; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  RNA Biol       Date:  2020-06-10       Impact factor: 4.652

Review 5.  Long Noncoding RNAs in Host-Pathogen Interactions.

Authors:  Federica Agliano; Vijay A Rathinam; Andrei E Medvedev; Sivapriya Kailasan Vanaja; Anthony T Vella
Journal:  Trends Immunol       Date:  2019-04-30       Impact factor: 16.687

Review 6.  Long non-coding RNAs: modulators of nuclear structure and function.

Authors:  Jan H Bergmann; David L Spector
Journal:  Curr Opin Cell Biol       Date:  2013-09-20       Impact factor: 8.382

Review 7.  Long noncoding RNAs in lipid metabolism.

Authors:  Coen van Solingen; Kaitlyn R Scacalossi; Kathryn J Moore
Journal:  Curr Opin Lipidol       Date:  2018-06       Impact factor: 4.776

8.  Long noncoding RNA SYISL regulates myogenesis by interacting with polycomb repressive complex 2.

Authors:  Jian Jun Jin; Wei Lv; Pan Xia; Zai Yan Xu; An Dai Zheng; Xiao Jing Wang; Shan Shan Wang; Rui Zeng; Hong Mei Luo; Guo Liang Li; Bo Zuo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-02       Impact factor: 11.205

9.  Exosomal lncRNAs as new players in cell-to-cell communication.

Authors:  Mihnea Dragomir; Baoqing Chen; George A Calin
Journal:  Transl Cancer Res       Date:  2018-03       Impact factor: 1.241

10.  FOXF1 transcription factor is required for formation of embryonic vasculature by regulating VEGF signaling in endothelial cells.

Authors:  Xiaomeng Ren; Vladimir Ustiyan; Arun Pradhan; Yuqi Cai; Jamie A Havrilak; Craig S Bolte; John M Shannon; Tanya V Kalin; Vladimir V Kalinichenko
Journal:  Circ Res       Date:  2014-08-04       Impact factor: 17.367

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