Literature DB >> 25135187

The bacterial translation stress response.

Agata L Starosta1, Jürgen Lassak, Kirsten Jung, Daniel N Wilson.   

Abstract

Throughout their life, bacteria need to sense and respond to environmental stress. Thus, such stress responses can require dramatic cellular reprogramming, both at the transcriptional as well as the translational level. This review focuses on the protein factors that interact with the bacterial translational apparatus to respond to and cope with different types of environmental stress. For example, the stringent factor RelA interacts with the ribosome to generate ppGpp under nutrient deprivation, whereas a variety of factors have been identified that bind to the ribosome under unfavorable growth conditions to shut-down (RelE, pY, RMF, HPF and EttA) or re-program (MazF, EF4 and BipA) translation. Additional factors have been identified that rescue ribosomes stalled due to stress-induced mRNA truncation (tmRNA, ArfA, ArfB), translation of unfavorable protein sequences (EF-P), heat shock-induced subunit dissociation (Hsp15), or antibiotic inhibition (TetM, FusB). Understanding the mechanism of how the bacterial cell responds to stress will not only provide fundamental insight into translation regulation, but will also be an important step to identifying new targets for the development of novel antimicrobial agents.
© 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Entities:  

Keywords:  antibiotic stress; mRNA truncation; nutrient depletion; stationary phase; toxin-antitoxin modules; translational stalling

Mesh:

Substances:

Year:  2014        PMID: 25135187      PMCID: PMC4227928          DOI: 10.1111/1574-6976.12083

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  250 in total

1.  Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

Authors:  M Pioletti; F Schlünzen; J Harms; R Zarivach; M Glühmann; H Avila; A Bashan; H Bartels; T Auerbach; C Jacobi; T Hartsch; A Yonath; F Franceschi
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

2.  Expression of ribosome modulation factor (RMF) in Escherichia coli requires ppGpp.

Authors:  K Izutsu; A Wada; C Wada
Journal:  Genes Cells       Date:  2001-08       Impact factor: 1.891

3.  Localization of the ribosomal protection protein Tet(O) on the ribosome and the mechanism of tetracycline resistance.

Authors:  C M Spahn; G Blaha; R K Agrawal; P Penczek; R A Grassucci; C A Trieber; S R Connell; D E Taylor; K H Nierhaus; J Frank
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

4.  Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage.

Authors:  D E Agafonov; V A Kolb; A S Spirin
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

5.  The ribosome modulation factor (RMF) binding site on the 100S ribosome of Escherichia coli.

Authors:  Hideji Yoshida; Yasushi Maki; Hisako Kato; Hisao Fujisawa; Kaori Izutsu; Chieko Wada; Akira Wada
Journal:  J Biochem       Date:  2002-12       Impact factor: 3.387

6.  The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site.

Authors:  Kim Pedersen; Andrey V Zavialov; Michael Yu Pavlov; Johan Elf; Kenn Gerdes; Måns Ehrenberg
Journal:  Cell       Date:  2003-01-10       Impact factor: 41.582

7.  BipA is required for growth of Escherichia coi K12 at low temperature.

Authors:  P L Pfennig; A M Flower
Journal:  Mol Genet Genomics       Date:  2001-10       Impact factor: 3.291

8.  Deficiency of essential GTP-binding protein ObgE in Escherichia coli inhibits chromosome partition.

Authors:  G Kobayashi; S Moriya; C Wada
Journal:  Mol Microbiol       Date:  2001-09       Impact factor: 3.501

9.  The nucleotide sequence and characterization of the relA gene of Escherichia coli.

Authors:  S Metzger; I B Dror; E Aizenman; G Schreiber; M Toone; J D Friesen; M Cashel; G Glaser
Journal:  J Biol Chem       Date:  1988-10-25       Impact factor: 5.157

10.  Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance.

Authors:  I Chopra; M Roberts
Journal:  Microbiol Mol Biol Rev       Date:  2001-06       Impact factor: 11.056

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  78 in total

1.  REP sequences: Mediators of the environmental stress response?

Authors:  Wenxing Liang; Murray P Deutscher
Journal:  RNA Biol       Date:  2015-11-17       Impact factor: 4.652

Review 2.  Regulation of bacterial gene expression by ribosome stalling and rescuing.

Authors:  Yongxin Jin; Shouguang Jin; Weihui Wu
Journal:  Curr Genet       Date:  2015-11-26       Impact factor: 3.886

Review 3.  Target protection as a key antibiotic resistance mechanism.

Authors:  Daniel N Wilson; Vasili Hauryliuk; Gemma C Atkinson; Alex J O'Neill
Journal:  Nat Rev Microbiol       Date:  2020-06-25       Impact factor: 60.633

Review 4.  Taking a Step Back from Back-Translocation: an Integrative View of LepA/EF4's Cellular Function.

Authors:  Jalyce L E Heller; Rajashekhar Kamalampeta; Hans-Joachim Wieden
Journal:  Mol Cell Biol       Date:  2017-05-31       Impact factor: 4.272

5.  Mechanistic insights into the alternative translation termination by ArfA and RF2.

Authors:  Chengying Ma; Daisuke Kurita; Ningning Li; Yan Chen; Hyouta Himeno; Ning Gao
Journal:  Nature       Date:  2016-12-01       Impact factor: 49.962

Review 6.  The physiology of growth arrest: uniting molecular and environmental microbiology.

Authors:  Megan Bergkessel; David W Basta; Dianne K Newman
Journal:  Nat Rev Microbiol       Date:  2016-08-11       Impact factor: 60.633

7.  A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model.

Authors:  Shashwat Deepali Nagar; Bhavye Aggarwal; Shikha Joon; Rakesh Bhatnagar; Sonika Bhatnagar
Journal:  OMICS       Date:  2016-05

Review 8.  Antibiotic dialogues: induction of silent biosynthetic gene clusters by exogenous small molecules.

Authors:  Bethany K Okada; Mohammad R Seyedsayamdost
Journal:  FEMS Microbiol Rev       Date:  2016-08-29       Impact factor: 16.408

9.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

10.  Ribosome hibernation facilitates tolerance of stationary-phase bacteria to aminoglycosides.

Authors:  Susannah L McKay; Daniel A Portnoy
Journal:  Antimicrob Agents Chemother       Date:  2015-08-31       Impact factor: 5.191

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