Literature DB >> 27510862

The physiology of growth arrest: uniting molecular and environmental microbiology.

Megan Bergkessel1, David W Basta1, Dianne K Newman1.   

Abstract

Most bacteria spend the majority of their time in prolonged states of very low metabolic activity and little or no growth, in which electron donors, electron acceptors and/or nutrients are limited, but cells are poised to undergo rapid division cycles when resources become available. These non-growing states are far less studied than other growth states, which leaves many questions regarding basic bacterial physiology unanswered. In this Review, we discuss findings from a small but diverse set of systems that have been used to investigate how growth-arrested bacteria adjust metabolism, regulate transcription and translation, and maintain their chromosomes. We highlight major questions that remain to be addressed, and suggest that progress in answering them will be aided by recent methodological advances and by dialectic between environmental and molecular microbiology perspectives.

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Year:  2016        PMID: 27510862     DOI: 10.1038/nrmicro.2016.107

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  113 in total

1.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

2.  DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP.

Authors:  Brian J Paul; Melanie M Barker; Wilma Ross; David A Schneider; Cathy Webb; John W Foster; Richard L Gourse
Journal:  Cell       Date:  2004-08-06       Impact factor: 41.582

3.  Capture of arginine at low concentrations by a marine psychrophilic bacterium.

Authors:  G G Geesey; R Y Morita
Journal:  Appl Environ Microbiol       Date:  1979-12       Impact factor: 4.792

4.  Starvation-survival patterns of sixteen freshly isolated open-ocean bacteria.

Authors:  P S Amy; R Y Morita
Journal:  Appl Environ Microbiol       Date:  1983-03       Impact factor: 4.792

Review 5.  (p)ppGpp: still magical?

Authors:  Katarzyna Potrykus; Michael Cashel
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

Review 6.  Conservation and transformation of energy by bacterial membranes.

Authors:  F M Harold
Journal:  Bacteriol Rev       Date:  1972-06

7.  Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum.

Authors:  Sebastian H Kopf; Alex L Sessions; Elise S Cowley; Carmen Reyes; Lindsey Van Sambeek; Yang Hu; Victoria J Orphan; Roberta Kato; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-29       Impact factor: 11.205

Review 8.  Regulation of Transcript Elongation.

Authors:  Georgiy A Belogurov; Irina Artsimovitch
Journal:  Annu Rev Microbiol       Date:  2015-06-24       Impact factor: 15.500

9.  DksA represses ribosomal gene transcription in Pseudomonas aeruginosa by interacting with RNA polymerase on ribosomal promoters.

Authors:  Karl Perron; Rachel Comte; Christian van Delden
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

10.  Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy.

Authors:  Joongbaek Kim; Shige H Yoshimura; Kohji Hizume; Ryosuke L Ohniwa; Akira Ishihama; Kunio Takeyasu
Journal:  Nucleic Acids Res       Date:  2004-04-01       Impact factor: 16.971

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  53 in total

Review 1.  The Colorful World of Extracellular Electron Shuttles.

Authors:  Nathaniel R Glasser; Scott H Saunders; Dianne K Newman
Journal:  Annu Rev Microbiol       Date:  2017-07-21       Impact factor: 15.500

Review 2.  The Potential for Redox-Active Metabolites To Enhance or Unlock Anaerobic Survival Metabolisms in Aerobes.

Authors:  John A Ciemniecki; Dianne K Newman
Journal:  J Bacteriol       Date:  2020-05-11       Impact factor: 3.490

3.  Wide lag time distributions break a trade-off between reproduction and survival in bacteria.

Authors:  Stefany Moreno-Gámez; Daniel J Kiviet; Clément Vulin; Susan Schlegel; Kim Schlegel; G Sander van Doorn; Martin Ackermann
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-15       Impact factor: 11.205

4.  Getting Our Fingers on the Pulse of Slow-Growing Bacteria in Hard-To-Reach Places.

Authors:  Tara Gallagher; Joann Phan; Katrine Whiteson
Journal:  J Bacteriol       Date:  2018-11-26       Impact factor: 3.490

Review 5.  Relationship between the Viable but Nonculturable State and Antibiotic Persister Cells.

Authors:  Mesrop Ayrapetyan; Tiffany Williams; James D Oliver
Journal:  J Bacteriol       Date:  2018-09-24       Impact factor: 3.490

6.  Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest.

Authors:  David W Basta; David Angeles-Albores; Melanie A Spero; John A Ciemniecki; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-06       Impact factor: 11.205

Review 7.  Sleeper cells: the stringent response and persistence in the Borreliella (Borrelia) burgdorferi enzootic cycle.

Authors:  Felipe C Cabello; Henry P Godfrey; Julia V Bugrysheva; Stuart A Newman
Journal:  Environ Microbiol       Date:  2017-09-11       Impact factor: 5.491

8.  Functional Characterization of the Pseudomonas aeruginosa Ribosome Hibernation-Promoting Factor.

Authors:  Michael J Franklin; Elizabeth Sandvik; Sila Yanardag; Kerry S Williamson
Journal:  J Bacteriol       Date:  2020-09-08       Impact factor: 3.490

9.  An Escherichia coli Nitrogen Starvation Response Is Important for Mutualistic Coexistence with Rhodopseudomonas palustris.

Authors:  Alexandra L McCully; Megan G Behringer; Jennifer R Gliessman; Evgeny V Pilipenko; Jeffrey L Mazny; Michael Lynch; D Allan Drummond; James B McKinlay
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

Review 10.  Burkholderia cepacia Complex Bacteria: a Feared Contamination Risk in Water-Based Pharmaceutical Products.

Authors:  Mariana Tavares; Mariya Kozak; Alexandra Balola; Isabel Sá-Correia
Journal:  Clin Microbiol Rev       Date:  2020-04-15       Impact factor: 26.132

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