Literature DB >> 11375931

Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage.

D E Agafonov1, V A Kolb, A S Spirin.   

Abstract

We have recently isolated and characterized a novel protein associated with Escherichia coli ribosomes and named protein Y (pY). Here we show that the ribosomes from bacterial cells growing at a normal physiological temperature contain no pY, whereas a temperature downshift results in the appearance of the protein in ribosomes. The protein also appears in the ribosomes of those cells that reached the stationary phase of growth at a physiological temperature. Our experiments with cell-free translation systems demonstrate that the protein inhibits translation at the elongation stage by blocking the binding of aminoacyl-tRNA to the ribosomal A site. The function of the protein in adaptation of cells to environmental stress is discussed.

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Year:  2001        PMID: 11375931      PMCID: PMC1083885          DOI: 10.1093/embo-reports/kve091

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  18 in total

1.  Preparative in vitro mRNA synthesis using SP6 and T7 RNA polymerases.

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2.  Major cold shock protein of Escherichia coli.

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3.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

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Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

4.  Ribosomes as sensors of heat and cold shock in Escherichia coli.

Authors:  R A VanBogelen; F C Neidhardt
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

5.  Limited capacity for protein synthesis at zero degrees centigrade in Escherichia coli.

Authors:  H K Das; A Goldstein
Journal:  J Mol Biol       Date:  1968-01-28       Impact factor: 5.469

6.  Ribosomal subunits produced by cold sensitive initiation of protein synthesis.

Authors:  H Friedman; P Lu; A Rich
Journal:  Nature       Date:  1969-08-30       Impact factor: 49.962

7.  A protein residing at the subunit interface of the bacterial ribosome.

Authors:  D E Agafonov; V A Kolb; I V Nazimov; A S Spirin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

8.  Green fluorescent protein as a marker for gene expression.

Authors:  M Chalfie; Y Tu; G Euskirchen; W W Ward; D C Prasher
Journal:  Science       Date:  1994-02-11       Impact factor: 47.728

9.  X-ray crystal structures of 70S ribosome functional complexes.

Authors:  J H Cate; M M Yusupov; G Z Yusupova; T N Earnest; H F Noller
Journal:  Science       Date:  1999-09-24       Impact factor: 47.728

Review 10.  The cold-shock response--a hot topic.

Authors:  P G Jones; M Inouye
Journal:  Mol Microbiol       Date:  1994-03       Impact factor: 3.501

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  41 in total

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Authors:  Jonathan Dworkin; Ishita M Shah
Journal:  Nat Rev Microbiol       Date:  2010-10-25       Impact factor: 60.633

Review 2.  RNA remodeling and gene regulation by cold shock proteins.

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Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

3.  Cold-stress-induced de novo expression of infC and role of IF3 in cold-shock translational bias.

Authors:  Anna Maria Giuliodori; Anna Brandi; Mara Giangrossi; Claudio O Gualerzi; Cynthia L Pon
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6.  Single-molecule investigations of the stringent response machinery in living bacterial cells.

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7.  Characterization of hibernating ribosomes in mammalian cells.

Authors:  Dawid Krokowski; Francesca Gaccioli; Mithu Majumder; Michael R Mullins; Celvie L Yuan; Barbara Papadopoulou; William C Merrick; Anton A Komar; Derek Taylor; Maria Hatzoglou
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8.  Importance of the 5 S rRNA-binding ribosomal proteins for cell viability and translation in Escherichia coli.

Authors:  Alexey P Korepanov; George M Gongadze; Maria B Garber; Donald L Court; Mikhail G Bubunenko
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

9.  Removal of a ribosome small subunit-dependent GTPase confers salt resistance on Escherichia coli cells.

Authors:  Yoichi Hase; Shinichiro Yokoyama; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2009-07-20       Impact factor: 4.942

10.  Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli.

Authors:  Tomohiro Shimada; Hideji Yoshida; Akira Ishihama
Journal:  J Bacteriol       Date:  2013-03-08       Impact factor: 3.490

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