D-Serine, an N-methyl D-aspartate receptor coagonist, and its regulatory enzymes, D-amino acid oxidase (DAO; degradation) and serine racemase (SR; synthesis), have been implicated in crucial roles of the developing central nervous system, yet the functional position that they play in regulating the availability of d-serine throughout development of the mammalian retina is not well-known. Using capillary electrophoresis and a sensitive method of enantiomeric amino acid separation, we were able to determine total levels of d-serine at specific ages during postnatal development of the mouse retina in two different strains of mice, one of which contained a loss-of-function point mutation for DAO while the other was a SR knockout line. Each mouse line was tested against conspecific wild type (WT) mice for each genetic strain. The universal trend in all WT and transgenic mice was a large amount of total retinal d-serine at postnatal age 2 (P2), followed by a dramatic decrease as the mice matured into adulthood (P70-80). SR knockout mice retinas had 41% less D-serine than WT retinas at P2, and 10 times less as an adult. DAO mutant mice retinas had significantly elevated levels of d-serine when compared to WT retinas at P2 (217%), P4 (223%), P8 (194%), and adulthood (227%).
D-Serine, an N-methyl D-aspartate receptor coagonist, and its regulatory enzymes, D-amino acid oxidase (DAO; degradation) and serine racemase (SR; synthesis), have been implicated in crucial roles of the developing central nervous system, yet the functional position that they play in regulating the availability of d-serine throughout development of the mammalian retina is not well-known. Using capillary electrophoresis and a sensitive method of enantiomeric amino acid separation, we were able to determine total levels of d-serine at specific ages during postnatal development of the mouse retina in two different strains of mice, one of which contained a loss-of-function point mutation for DAO while the other was a SR knockout line. Each mouse line was tested against conspecific wild type (WT) mice for each genetic strain. The universal trend in all WT and transgenic mice was a large amount of total retinal d-serine at postnatal age 2 (P2), followed by a dramatic decrease as the mice matured into adulthood (P70-80). SR knockout mice retinas had 41% less D-serine than WT retinas at P2, and 10 times less as an adult. DAO mutant mice retinas had significantly elevated levels of d-serine when compared to WT retinas at P2 (217%), P4 (223%), P8 (194%), and adulthood (227%).
N-Methyl d-aspartate
receptors (NMDARs)
are unique among the major ionotropic glutamate receptors because
they require an endogenous coagonist, in addition to glutamate, for
ion channel gating. This coagonist was initially identified as glycine;[1] but additional studies have determined that other
amino acids, including d-serine, can substitute for, or even
predominate over, glycine.[2] Hashimoto et
al. developed an HPLC technique that separated amino acid enantiomers
and discovered the presence of d-serine with significantly
high levels in areas of the brain that are also rich in NMDA receptors.[3,4] The discovery of serine racemase (SR), the enzyme that converts l-serine to d-serine, established d-serine
as a viable NMDAR coagonist[5,6] rather than a substance
that varied according to extraneous sources, such as dietary intake. d-Serine, NMDARs, and the d-serine regulatory enzymes, d-amino acid oxidase (DAO) and SR, have been implicated in multiple
aspects of nervous system development, including regulation of dendritic
morphology in pyramidal neurons,[7] cell
migration in the cerebellar cortex,[8,9] and shaping
synaptogenesis and neuronal circuitry.[10]d-Serine was more recently identified in the retina,[11] where it, rather than glycine, is the principal
endogenous coagonist of NMDARs on retinal ganglion cells (RGCs).[12,13] Importantly, the coagonist sites of NMDA receptors in ganglion cells
remain subsaturated, positioning the sensitivity of NMDA receptors
to be further modulated by coagonist introduction, as evidenced by
exogenously applied d-serine enhancing light-evoked NMDA
receptor currents in RGCs.[14] There is also
evidence that d-serine can inhibit α-amino-3-hydroxy-5-methyl-4-isoxazole-proprionic
acid (AMPA) and kainate receptors in the retina[15] as well as regulate cerebellar long-term depression through
the ionotropic glutamate receptor, delta-2 (GluD2),[16] which is present in the mammalian retina.[17]The enzymes SR and DAO are believed to be central
for the enzymatic
regulation of d-serine, and disabling the function of either
enzyme typically increases or decreases d-serine levels depending
on the role of the enzyme. SR is present in the mammalian brain and
can catalyze the racemization of d-serine from its enantiomer, l-serine.[5] Mice lacking SR (SR–/–) have significantly reduced levels of d-serine in multiple brain regions,[18] including the adult retina, in which the NMDAR to AMPA receptor
ratio of light-evoked currents is notably diminished.[13] DAO, on the other hand, catalyzes the degradation of d-amino acids into keto acids. Mice transfected with DAO loss-of-function
gene mutations (DAO–/–)[19] have elevated levels of d-serine in the cerebellum
and medulla oblongata, where wild-type DAO activity is particularly
high.[20] We have reported a similar d-serine elevation in the DAO–/– retina
with a concomitant increase in NMDAR contributions to light-evoked
responses of RGCs when compared to WT controls.[21] Elevated levels of endogenous d-serine in DAO–/– mice also leave RGC NMDAR coagonist sites
fully occupied and less available to coagonist modulation, in contrast
to wild-type mice of either strain or to SR–/– mice.[21] In addition, the GlyT1 transporter
plays an important role in setting local concentrations of glycine
to d-serine ratios. Heterozygote mice deficient in the GlyT1
transporter show saturation of the coagonist site of retinal ganglion
cells.[22]The present study was undertaken
to explore the postnatal development
of d-serine in mice with deficiencies in SR and DAO; it was
stimulated by results which suggest that d-serine plays an
important role in determining the NMDA to AMPA receptor ratio in adult
mice.[13,21] We used capillary electrophoresis (CE) to
measure the levels of d-serine in the mouse retina at discrete
ages throughout postnatal development. Our results show high postnatal d-serine in the retinas of all wild-type and transgenic strains
followed by a decline into adulthood. We found that d-serine
levels were increased in DAO–/– mice and
decreased in SR–/– mice when compared to
their age-matched wild-type counterparts for specific developmental
periods.
Results and Discussion
Figure 1 illustrates a comparison of total d-serine between the
WT retinas for the C57 background strain
of the SR–/– mice (SR+/+) and
the ddY background strain of the DAO–/– mice
(DAO+/+). In both strains, we found a significant elevation
in early postnatal d-serine levels, which taper off during
the course of development. This dramatic developmental decrease in
SR+/+d-serine has been similarly reported in
the mouse cerebellum[24,25] and previously in the retina
based on immunostaining techniques.[23] The
observed early high concentration of d-serine theoretically
positions it to influence the expression and physiological characteristics
of NMDARs during a critical developmental period in the first week
of life. Although both strains demonstrated the same pattern of retinal d-serine changes over time, adult DAO+/+ levels (101
± 26.7 nmol/g, N = 6, ddY background) were about
3 times larger than those in adult SR+/+ mice (35.1 ±
8.15 nmol/g, N = 7, C57 background). The differing
adult d-serine levels in the two WT mice are most likely
strain differences, as NMDA receptor activity is known to be strain
dependent.[26,27]
Figure 1
Comparison between d-serine levels
in DAO+/+ and SR+/+ homogenized retinas. The
only significant difference
was between the adult animals of both strains (* indicates p < 0.05, two-tailed Student’s t test; SR+/+ P2 N = 7, P8 N = 6, P32 N = 6, adult N = 6; DAO+/+ P2 through adult N = 6 each).
Comparison between d-serine levels
in DAO+/+ and SR+/+ homogenized retinas. The
only significant difference
was between the adult animals of both strains (* indicates p < 0.05, two-tailed Student’s t test; SR+/+ P2 N = 7, P8 N = 6, P32 N = 6, adult N = 6; DAO+/+ P2 through adult N = 6 each).Figure 2 illustrates the
time course of
changes in ambient d-serine levels comparing P2, P8, P32,
and adult SR+/+/SR–/– retinas
(magnified in the inset). Significant differences of total retinal d-serine levels were observed between SR+/+ and SR–/– mice at P2 (SR+/+, 1110 ±
98.6 nmol/g, N = 7; SR–/–, 655 ± 113 nmol/g, N = 6) and in adulthood
(SR+/+, 35.1 ± 8.15 nmol/g, N = 7;
SR–/–, 3.34 ± 1.23 nmol/g, N = 6), with the transgenic mice expressing less d-serine
than controls. Figure 4C illustrates the prominent
difference between adult SR+/+ and SR–/– electropherograms. At P8 and P32, d-serine levels did not
differ significantly between SR+/+ and SR–/– retinas, but the mean levels in SR–/– mice
trended lower. Low levels of ambient d-serine during a period
when glutamatergic receptor expression levels are being set could
easily have diminished the demand for NMDAR development relative to d-serine insensitive AMPARs (at the levels reported, but see
ref (15)), which ultimately
dominate retinal ganglion cell activity in SR–/– adults.[13] Although diminished d-serine has not been shown to directly impact NMDAR protein expression
in the retina, we have previously found alterations to adult SR+/+ retinal glutamatergic activity that is consistent with
this hypothesis,[21] and these mice do show
an increased expression of GluN1 in the cerebellum when compared to
SR+/+ mice.[28]
Figure 2
d-Serine levels
in SR+/+ and SR–/– retinal homogenates.
At postnatal day 2 (P2), the SR–/– retinal
homogenates had 41% less d-serine than the SR+/+ retina. The disparity between strains was increased to
a 10-fold difference in adulthood. From P2 through adulthood (P70–80), d-serine levels steadily declined in both SR+/+ and
SR–/– retinas, for a 32-fold difference and
196-fold difference, respectively. There was no significant difference
between strains at P8 or P32 (* indicates p <
0.01, one-tailed Student’s t test; SR+/+ P2 N = 7, P8 N = 6, P32 N = 6, adult N = 6; SR–/– P2 N = 6, P8 N = 6, P32 N = 7, adult N = 6).
Figure 4
Identification of capillary
electrophoretic peaks from homogenized
mouse retinas. (A) Electropherogram (relative fluorescent units (RFU)
vs time) of an adult SR+/+ mouse retina showing the relative
peak locations of NBD-F derivatized glycine (Gly), glutamine (Gln),
γ-aminobutyric acid (GABA), taurine (Tau), l-serine
(l-Ser), d-serine (d-Ser), α-aminoadipic
acid (internal standard), and glutamate (Glu). (B) Normalized electropherograms
of l-serine and d-serine in an adult SR+/+ vs the addition of d-serine deaminase (DsDa), which completely
abolished the d-serine peak. (C) Normalized electropherograms
of d-serine in an adult SR+/+ sample vs an adult
SR–/– sample. (D) Normalized electropherograms
of d-serine in an adult DAO+/+ sample vs an adult
DAO–/–sample.
d-Serine levels
in SR+/+ and SR–/– retinal homogenates.
At postnatal day 2 (P2), the SR–/– retinal
homogenates had 41% less d-serine than the SR+/+ retina. The disparity between strains was increased to
a 10-fold difference in adulthood. From P2 through adulthood (P70–80), d-serine levels steadily declined in both SR+/+ and
SR–/– retinas, for a 32-fold difference and
196-fold difference, respectively. There was no significant difference
between strains at P8 or P32 (* indicates p <
0.01, one-tailed Student’s t test; SR+/+ P2 N = 7, P8 N = 6, P32 N = 6, adult N = 6; SR–/– P2 N = 6, P8 N = 6, P32 N = 7, adult N = 6).Surprisingly, although SR is believed to be the primary source
of endogenous d-serine, the loss of this enzyme did not entirely
eliminate the presence of retinal d-serine. Early P2d-serine was still 196-fold higher in the SR–/– adult retina, compared to a 32-fold difference observed between
the same points in the wild-type control. Furthermore, there were
no differences in l-serine, the substrate for SR-based racemization
to d-serine, between SR+/+ and SR–/– mice at any postnatal age, although l-serine levels were
elevated at P2 (44 700 ± 1910 nmol/g, N = 10) and decreased into adulthood (4000 ± 382 nmol/g, N = 14). One alternate source of d-serine might
be as a dietary component of the mouse feed.[29] However, we tested a group of SR–/– animals,
retained on a d-serine free diet from birth, and found no
change in the adult retinal d-serine concentration (data
not shown). Gut bacteria has also been suggested to supplement systemic d-serine, although published results have been mixed and highlight
tissue-specific variability.[29−31] A concentrated introduction through
nutrient enriched maternal milk could account for initial peaks in d-serine and l-serine concentrations in SR–/– mice while the timing of progressive weaning is coincident with
the noted period of decline. Finally, it is entirely possible that
unidentified catalytic pathways exist for the production of d-serine, independent of SR.[32−34] Although an alternative source
is yet to be established, local transport systems could easily adjust d-serine in a tissue specific manner, including ASC-type transporters
in the retina.[35] This might also explain
why SR–/– exhibited wild-type levels of d-serine at the whole eyeball level.[36]Figure 3 illustrates that d-serine
levels were significantly higher in adult DAO–/– mice (229 ± 51.2 nmol/g, N = 7) in comparison
to adult DAO+/+ mice (101 ± 26.7 nmol/g, N = 6). The visual distinction between adult DAO+/+ and
DAO–/– electropherograms is depicted in Figure 4D. In addition, the DAO–/– mice displayed an approximate 2-fold increase
in retinal d-serine at P2 (DAO+/+, 1240 ±
110 nmol/g, N = 6; DAO–/–, 2690 ± 342 nmol/g, N = 7), P4 (DAO+/+, 1230 ± 143 nmol/g, N = 6; DAO–/–, 2740 ± 633 nmol/g, N = 7), and P8 (DAO+/+, 577 ± 60.1 nmol/g, N = 6; DAO–/–, 1120 ± 80.2 nmol/g, N = 8). This prolonged period of elevated d-serine in DAO–/– mice could have encouraged higher levels
of NMDAR development, which along with enhanced coagonist availability
would contribute to the higher NMDAR/AMPAR ratios seen in light-evoked
RGC responses and GluN2A/B to GluA2 expression of the adult DAO–/– retina.[21] It remains
possible, however, that elevated coagonist availability in adulthood
could alone account for the receptor expression and activity changes
we have observed. Similar to the retinas of SR–/– mice, the transgene effect had no significant impact on d-serine levels beyond P8, suggesting that the biological demand for
manipulable d-serine regulation during retinal development
is focused on the first few days of postnatal life.
Figure 3
d-Serine levels
in DAO+/+ and DAO–/– homogenized
retinas. At postnatal day 2 (P2), the DAO–/– retinal homogenates had 2.2 times more d-serine than their
WT control. The difference between strains was significant at all
ages, apart from P16–32. Adult retinal homogenates indicated
a 2.3-fold difference. From P2 through adulthood, d-serine
steadily declined by a 12-fold difference in both DAO+/+ and DAO–/– retinas (* indicates p < 0.05, one-tailed Student’s t test; DAO+/+ P2 through adult N = 6
each; DAO–/– P2 N = 7, P4 N = 7, P8 N = 8, P16 N = 6, P24 N = 6, P32 N = 7, adult N = 7).
d-Serine levels
in DAO+/+ and DAO–/– homogenized
retinas. At postnatal day 2 (P2), the DAO–/– retinal homogenates had 2.2 times more d-serine than their
WT control. The difference between strains was significant at all
ages, apart from P16–32. Adult retinal homogenates indicated
a 2.3-fold difference. From P2 through adulthood, d-serine
steadily declined by a 12-fold difference in both DAO+/+ and DAO–/– retinas (* indicates p < 0.05, one-tailed Student’s t test; DAO+/+ P2 through adult N = 6
each; DAO–/– P2 N = 7, P4 N = 7, P8 N = 8, P16 N = 6, P24 N = 6, P32 N = 7, adult N = 7).Identification of capillary
electrophoretic peaks from homogenized
mouse retinas. (A) Electropherogram (relative fluorescent units (RFU)
vs time) of an adult SR+/+ mouse retina showing the relative
peak locations of NBD-F derivatized glycine (Gly), glutamine (Gln),
γ-aminobutyric acid (GABA), taurine (Tau), l-serine
(l-Ser), d-serine (d-Ser), α-aminoadipic
acid (internal standard), and glutamate (Glu). (B) Normalized electropherograms
of l-serine and d-serine in an adult SR+/+ vs the addition of d-serine deaminase (DsDa), which completely
abolished the d-serine peak. (C) Normalized electropherograms
of d-serine in an adult SR+/+ sample vs an adult
SR–/– sample. (D) Normalized electropherograms
of d-serine in an adult DAO+/+ sample vs an adult
DAO–/–sample.Despite the absence of d-serine’s primary
catabolic
pathway, DAO–/– retinas demonstrated high
P2d-serine, declining 12-fold by adulthood. This could be
explained by the local transport systems or the maternal milk hypotheses
described above, the latter of which could also account for the elevated
P2 (45 300 ± 1640 nmol/g, N = 13) and
adulthood decline (6500 ± 348 nmol/g, N = 13) of l-serine
in the DAO–/– mice. d-Serine does
have an alternate degradation pathway through an SR-catalyzed α,β-elimination
reaction,[37] but this mechanism could not
account for declines in the developing SR–/– retinas. It remains possible that a pathway for d-serine
elimination, independent of DAO or SR, is yet to be identified.Although we have argued for a critical developmental period in
which early postnatal d-serine shapes glutamatergic circuitry
in the adult retina, our constitutional mouse models show significant
changes in d-serine in both early life and adulthood. Therefore,
it could be argued that the altered receptor activity ratios we have
previously observed can be solely attributed to the synaptic availability
of d-serine in the adult knockouts. Several pieces of circumstantial
evidence, however, weigh in favor of a significant developmental period
influence. While we have proposed that high coagonist availability
promotes NMDAR activity and low availability diminishes it, similar
conditions in the adult animal would not necessarily encourage the
same result. Adult application of d-serine has been shown
to promote the internalization of membrane NMDARs,[38] while chronic receptor antagonism, which could be viewed
as a period of diminished NMDAR activity, has been well documented
to increase NMDAR expression and function.[39,40] In addition, d-serine has been identified as a critical
regulator of postnatal development in other CNS regions,[41,42] specifically influencing NMDAR participation in synaptic activity
with prolonged effects.[10,43] Finally, two studies
suggest the sufficiency of neonatal d-serine changes to permanently
impact on adult glutamatergic function. Mice with a 3-PGDH deficiency
lack both l-serine and d-serine throughout their
lives, but in one investigation maternal d-serine supplementation
alone was able to completely reverse the otherwise abnormal neurological
phenotype.[10,44] In another study, an SRR inhibitor
was administered to rats from P7 to P9, which led to adult behavioral
deficits despite a normal amino acid profile in multiple brain regions.
Deficits in this latter model were consistent with schizophrenia,
similar to our SR–/– mouse, and could be
rescued by preadulthood treatment with d-serine.[45] Nevertheless, a conclusive argument about the
relative significance of postnatal and adult d-serine concentrations
will require a detailed study of NMDAR activity and expression patterns
in the retina at key points between birth and adulthood.
Conclusion
We have found that the retinal levels of d-serine are
tightly controlled during the first week of postnatal life and vary
according to deficiencies in either DAO or SR, and that the changes
over the course of development are well-positioned to regulate the
expression of NMDARs. During this period, diminished d-serine
in SR–/– or elevated d-serine in
the DAO–/– could conceivably contribute to
the altered NMDAR/AMPAR ratios observed in the adult retina of these
mice. The fundamentals of d-serine function, in the retina
and elsewhere, remain a fruitful topic of study, both as a part of
normal physiological activity and as a mechanistic contributor to
various disease pathologies. In particular, alternative sources of d-serine regulation outside of SR and DAO should be examined
with a thorough application of the newest research tools, such as
cell-type specific transgenic mice and antibodies with confirmed staining
specificity,[46,47] both of which will be invaluable
in confirming past work and resolving fundamental questions. In addition
to synaptic shaping, the source of d-serine release, neuronal
vs glial, continues to be vigorously debated. We note that the cortical
and hippocampal regions where neuronal-dominant d-serine
release has been identified[47−49] also possess high SR and low
DAO activity.[25,47,50] By contrast in the retina and cerebellum, where astrocytic d-serine release is demonstrably critical,[12,24,41,51−53] the relative enzyme contributions seem reversed,[16,54] raising the intriguing hypothesis that the tissue-specific balance
of regulatory enzyme activity might influence the predominant site
of d-serine release. Recent discoveries have also pointed
toward a glycine vs d-serine differentiation in the modulation
of excitotoxic LTD-inducing extrasynaptic NMDARs vs neuroprotective
LTP-promoting synaptic NMDARs.[55,56] It is at least plausible
that changes in d-serine availability, fueled by SR and DAO
regulation, could have downstream effects on cell excitability, viability,
and plasticity. For example, SR–/– mice appear
to compensate for diminished d-serine by expanding the role
of glycine as a synaptic coagonist,[56] but
this less-powerful NMDAR activator could easily exacerbate the hypoglutamatergia
believed to underlie the schizophrenic phenotype of these mice.[57] The results of the present study add to this
growing body of work to highlight a critical but incompletely characterized
role for d-serine in the multisystem development of glutamatergic
circuitry in the retina and beyond.
Methods
Subjects
SR–/– mice and their
wild-type (SR+/+) controls were generated on a C57/BL6
background strain[18] and obtained from Joe
Coyle of Harvard University. DAO–/– mice
and their wild-type (DAO+/+) controls were generated on
a ddY background strain.[19] All mice were
group housed in a conventional facility on a 12:12 light cycle with
ad libitum access to food and water. Both males and females were used
indiscriminately for all experiments at ages between postnatal day
2 (P2) and adult (>P70), with a group number of N = 6–8 per reported age category. All procedures were performed
in accordance with protocols approved by the Institutional Animal
Care and Use Committee at the University of Minnesota.
Retina Isolation
and Preparation
Mice were euthanized
by an overdose of pentobarbital (0.1 mL of 50 mg/mL concentration,
I.P.) or by decapitation for neonatal mice (<P16) followed by bilateral
pneumothorax to ensure death. The eyes were enucleated and placed
in mammalianbicarbonate Ringer solution containing 111 mM NaCl, 3
mM KCl, 2 mM CaCl2, 1 mM Mg2SO4,
32 mM NaHCO3, 0.5 mM NaH2PO4, and
15 mM dextrose, bubbled at room temperature with 95% O2 and 5% CO2 until use, final pH 7.4. Retinas from both
eyes of each animal were surgically isolated before being processed
for capillary electrophoresis.We pooled the retinas from each
animal into ice cold 0.6 M perchloric acid (PCA, 115 μL) and
homogenized them with a sonicator probe to precipitate proteins. An
internal standard, 300 μM α-aminoadipic acid (5 μL),
was added to the homogenate, which was then neutralized with 2 M KOH
(35 μL). After the sample was pelleted in a tabletop centrifuge
at 4 °C, the supernatant was spun again through a Spin-X centrifuge
tube filter (Corning Inc., 0.22 μm cellulose acetate). Next,
120 μL of the remaining supernatant was combined with a 1 M
borate and 0.15 M KOH solution (20 μL) and then frozen at −20
°C until CE analysis. The pellet was resuspended in 2 M NaOH
(120 μL) and then quantified for protein concentration using
a bicinchoninic acid assay (BCA; Pierce, Rockford, IL).
Capillary Electrophoresis
We used CE to determine d-serine concentrations in processed
tissue homogenates as previously
described[35] due to its high sensitivity.
Each sample was reacted at 60 °C for 15 min with 4-fluoro-7-nitrobenz-2-oxa-1,3-daizole
(NBD-F, Molecular Probes, Eugene, OR) dissolved in acetonitrile (1
mg/100 μL) to fluorescently label primary and secondary amines.[58] Separation was performed at 18 kV (80 μA)
on a commercial CE instrument (Beckman-Coulter MDQ, Fullerton, CA)
using a 50 μm inner diameter, 40 cm length capillary with laser-induced
fluorescence (LIF) detection. The separation buffer consisted of 165
mM borate pH 10.00–10.15 (dependent on separation quality)
and 34 mM (2-hydroxypropyl)-β-cyclodextrin (Sigma-Aldrich, St
Louis, MO). Electropherograms (fluorescence vs time) were digitally
recorded with 32 Karat software (Beckman-Coulter) from fluorescent
signals detected with a photomultiplier tube (Figure 4A). Amino acid levels were quantified by integrating electropherogram
peaks, normalizing the amino acid peaks to an internal standard, and
then comparing them to known standards. Standards were prepared in
triplicate ranging from 5 nM to 1.3 μM for d-serine
and 50 nM to 13 μM for l-serine. The limit of detection
(LOD) for our assay was 3.4 nM d-serine per sample before
protein normalization and was calculated with our standard curve data
and regression statistics (the LOD was equal to the y-intercept plus three times the standard deviation of the regression).
The calculated LOD applied to both d-serine and l-serine, as peaks were identical for equal concentrations of the
isomers. Only two samples, both of which were SR–/– adults, fell below the limit of detection, and their values were
reported as zero. d-Serine presence was confirmed with peak
depletion by degrading samples with d-serine deaminase (20
min at room temperature), which has been shown previously to efficiently
and completely degrade d-serine under these conditions[14] (Figure 4B).
Statistical
Analysis
Each CE data point (N) was derived
from a homogenization of two pooled retinas from a
single animal. The measured values within each age category do not
violate normality assumptions as revealed from Shapiro-Wilk tests.
However, the strains DAO+/+/DAO–/– and SR+/+/SR–/– are quite dissimilar
from one another and produced considerable fluctuations in their group
variances. We refrained from using the standard one-way analysis of
variance (ANOVA) method, and instead used independent 2-sample Student’s t tests for comparison at specified time points because
we were only interested in comparing these strains between +/+ and
−/– mice at specific ages and not across the spectrum
of different time points (i.e., we avoided comparing P2 with P4, etc.).
Specifically, Student’s two-tailed t test
was used to calculate the significance between wild type strains for
each age category in Figure 1, and Student’s
one-tailed t test was used to calculate significance
between strains for each age category in Figures 2 and 3. All data is expressed as mean
± SE (nmol/g), and significance was defined as p < 0.05.
Authors: Dina Rosenberg; Samar Artoul; Adi C Segal; Goren Kolodney; Inna Radzishevsky; Elena Dikopoltsev; Veronika N Foltyn; Ran Inoue; Hisashi Mori; Jean-Marie Billard; Herman Wolosker Journal: J Neurosci Date: 2013-02-20 Impact factor: 6.167
Authors: L M DeVito; D T Balu; B R Kanter; C Lykken; A C Basu; J T Coyle; H Eichenbaum Journal: Genes Brain Behav Date: 2010-11-02 Impact factor: 3.449
Authors: Amber D Lockridge; Daniel C Baumann; Brian Akhaphong; Alleah Abrenica; Robert F Miller; Emilyn U Alejandro Journal: Islets Date: 2016-11 Impact factor: 2.694
Authors: Nathalia Torres Jimenez; Justin W Lines; Rachel B Kueppers; Paulo Kofuji; Henry Wei; Amy Rankila; Joseph T Coyle; Robert F Miller; Linda K McLoon Journal: Invest Ophthalmol Vis Sci Date: 2020-02-07 Impact factor: 4.799