Literature DB >> 25043005

Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.

Christopher Kupitz1, Shibom Basu1, Ingo Grotjohann2, Raimund Fromme2, Nadia A Zatsepin3, Kimberly N Rendek2, Mark S Hunter4, Robert L Shoeman5, Thomas A White6, Dingjie Wang3, Daniel James3, Jay-How Yang2, Danielle E Cobb2, Brenda Reeder2, Raymond G Sierra7, Haiguang Liu3, Anton Barty6, Andrew L Aquila8, Daniel Deponte9, Richard A Kirian10, Sadia Bari11, Jesse J Bergkamp2, Kenneth R Beyerlein6, Michael J Bogan7, Carl Caleman12, Tzu-Chiao Chao13, Chelsie E Conrad2, Katherine M Davis14, Holger Fleckenstein6, Lorenzo Galli15, Stefan P Hau-Riege16, Stephan Kassemeyer17, Hartawan Laksmono7, Mengning Liang6, Lukas Lomb5, Stefano Marchesini18, Andrew V Martin19, Marc Messerschmidt20, Despina Milathianaki20, Karol Nass21, Alexandra Ros2, Shatabdi Roy-Chowdhury2, Kevin Schmidt3, Marvin Seibert22, Jan Steinbrener5, Francesco Stellato6, Lifen Yan14, Chunhong Yoon8, Thomas A Moore2, Ana L Moore2, Yulia Pushkar14, Garth J Williams20, Sébastien Boutet20, R Bruce Doak3, Uwe Weierstall3, Matthias Frank16, Henry N Chapman23, John C H Spence3, Petra Fromme2.   

Abstract

Photosynthesis, a process catalysed by plants, algae and cyanobacteria converts sunlight to energy thus sustaining all higher life on Earth. Two large membrane protein complexes, photosystem I and II (PSI and PSII), act in series to catalyse the light-driven reactions in photosynthesis. PSII catalyses the light-driven water splitting process, which maintains the Earth's oxygenic atmosphere. In this process, the oxygen-evolving complex (OEC) of PSII cycles through five states, S0 to S4, in which four electrons are sequentially extracted from the OEC in four light-driven charge-separation events. Here we describe time resolved experiments on PSII nano/microcrystals from Thermosynechococcus elongatus performed with the recently developed technique of serial femtosecond crystallography. Structures have been determined from PSII in the dark S1 state and after double laser excitation (putative S3 state) at 5 and 5.5 Å resolution, respectively. The results provide evidence that PSII undergoes significant conformational changes at the electron acceptor side and at the Mn4CaO5 core of the OEC. These include an elongation of the metal cluster, accompanied by changes in the protein environment, which could allow for binding of the second substrate water molecule between the more distant protruding Mn (referred to as the 'dangler' Mn) and the Mn3CaOx cubane in the S2 to S3 transition, as predicted by spectroscopic and computational studies. This work shows the great potential for time-resolved serial femtosecond crystallography for investigation of catalytic processes in biomolecules.

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Year:  2014        PMID: 25043005      PMCID: PMC4821544          DOI: 10.1038/nature13453

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  46 in total

1.  Kinetics of electron transfer from Q(a) to Q(b) in photosystem II.

Authors:  R de Wijn; H J van Gorkom
Journal:  Biochemistry       Date:  2001-10-02       Impact factor: 3.162

2.  Misses during water oxidation in photosystem II are S state-dependent.

Authors:  Guangye Han; Fikret Mamedov; Stenbjörn Styring
Journal:  J Biol Chem       Date:  2012-02-28       Impact factor: 5.157

3.  Ammonia binding to the oxygen-evolving complex of photosystem II identifies the solvent-exchangeable oxygen bridge (μ-oxo) of the manganese tetramer.

Authors:  Montserrat Pérez Navarro; William M Ames; Håkan Nilsson; Thomas Lohmiller; Dimitrios A Pantazis; Leonid Rapatskiy; Marc M Nowaczyk; Frank Neese; Alain Boussac; Johannes Messinger; Wolfgang Lubitz; Nicholas Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-10       Impact factor: 11.205

4.  Direct quantification of the four individual S states in Photosystem II using EPR spectroscopy.

Authors:  Guangye Han; Felix M Ho; Kajsa G V Havelius; Susan F Morvaridi; Fikret Mamedov; Stenbjörn Styring
Journal:  Biochim Biophys Acta       Date:  2008-03-21

Review 5.  Biological water oxidation.

Authors:  Nicholas Cox; Dimitrios A Pantazis; Frank Neese; Wolfgang Lubitz
Journal:  Acc Chem Res       Date:  2013-03-18       Impact factor: 22.384

6.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 8.  Oxidation state changes of the Mn4Ca cluster in photosystem II.

Authors:  Junko Yano; Vittal K Yachandra
Journal:  Photosynth Res       Date:  2007-04-12       Impact factor: 3.573

9.  New Python-based methods for data processing.

Authors:  Nicholas K Sauter; Johan Hattne; Ralf W Grosse-Kunstleve; Nathaniel Echols
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-18

10.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16
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  139 in total

1.  Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.

Authors:  James P Hall; Fergus E Poynton; Páraic M Keane; Sarah P Gurung; John A Brazier; David J Cardin; Graeme Winter; Thorfinnur Gunnlaugsson; Igor V Sazanovich; Michael Towrie; Christine J Cardin; John M Kelly; Susan J Quinn
Journal:  Nat Chem       Date:  2015-10-19       Impact factor: 24.427

2.  Critical assessment of the emission spectra of various photosystem II core complexes.

Authors:  Jinhai Chen; Adam Kell; Khem Acharya; Christopher Kupitz; Petra Fromme; Ryszard Jankowiak
Journal:  Photosynth Res       Date:  2015-04-02       Impact factor: 3.573

3.  Tetranuclear [MnIIIMn3IVO4] Complexes as Spectroscopic Models of the S2 State of the Oxygen Evolving Complex in Photosystem II.

Authors:  Heui Beom Lee; Angela A Shiau; Paul H Oyala; David A Marchiori; Sheraz Gul; Ruchira Chatterjee; Junko Yano; R David Britt; Theodor Agapie
Journal:  J Am Chem Soc       Date:  2018-11-30       Impact factor: 15.419

4.  The New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLS.

Authors:  Sébastien Boutet; Aina Cohen; Soichi Wakatsuki
Journal:  Synchrotron Radiat News       Date:  2016-02-01

Review 5.  A Bright Future for Serial Femtosecond Crystallography with XFELs.

Authors:  Linda C Johansson; Benjamin Stauch; Andrii Ishchenko; Vadim Cherezov
Journal:  Trends Biochem Sci       Date:  2017-07-18       Impact factor: 13.807

6.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

Review 7.  Structural biology of G protein-coupled receptors: new opportunities from XFELs and cryoEM.

Authors:  Andrii Ishchenko; Cornelius Gati; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2018-03-16       Impact factor: 6.809

Review 8.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

9.  No observable conformational changes in PSII.

Authors:  Nicholas K Sauter; Nathaniel Echols; Paul D Adams; Petrus H Zwart; Jan Kern; Aaron S Brewster; Sergey Koroidov; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Nature       Date:  2016-05-19       Impact factor: 49.962

10.  XFELs open a new era in structural chemical biology.

Authors:  Petra Fromme
Journal:  Nat Chem Biol       Date:  2015-12       Impact factor: 15.040

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