Literature DB >> 24023065

Ammonia binding to the oxygen-evolving complex of photosystem II identifies the solvent-exchangeable oxygen bridge (μ-oxo) of the manganese tetramer.

Montserrat Pérez Navarro1, William M Ames, Håkan Nilsson, Thomas Lohmiller, Dimitrios A Pantazis, Leonid Rapatskiy, Marc M Nowaczyk, Frank Neese, Alain Boussac, Johannes Messinger, Wolfgang Lubitz, Nicholas Cox.   

Abstract

The assignment of the two substrate water sites of the tetra-manganese penta-oxygen calcium (Mn4O5Ca) cluster of photosystem II is essential for the elucidation of the mechanism of biological O-O bond formation and the subsequent design of bio-inspired water-splitting catalysts. We recently demonstrated using pulsed EPR spectroscopy that one of the five oxygen bridges (μ-oxo) exchanges unusually rapidly with bulk water and is thus a likely candidate for one of the substrates. Ammonia, a water analog, was previously shown to bind to the Mn4O5Ca cluster, potentially displacing a water/substrate ligand [Britt RD, et al. (1989) J Am Chem Soc 111(10):3522-3532]. Here we show by a combination of EPR and time-resolved membrane inlet mass spectrometry that the binding of ammonia perturbs the exchangeable μ-oxo bridge without drastically altering the binding/exchange kinetics of the two substrates. In combination with broken-symmetry density functional theory, our results show that (i) the exchangable μ-oxo bridge is O5 {using the labeling of the current crystal structure [Umena Y, et al. (2011) Nature 473(7345):55-60]}; (ii) ammonia displaces a water ligand to the outer manganese (MnA4-W1); and (iii) as W1 is trans to O5, ammonia binding elongates the MnA4-O5 bond, leading to the perturbation of the μ-oxo bridge resonance and to a small change in the water exchange rates. These experimental results support O-O bond formation between O5 and possibly an oxyl radical as proposed by Siegbahn and exclude W1 as the second substrate water.

Entities:  

Keywords:  Mn cluster; OEC; PSII; water oxidizing complex; water-oxidation

Mesh:

Substances:

Year:  2013        PMID: 24023065      PMCID: PMC3785721          DOI: 10.1073/pnas.1304334110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  (18)O isotope exchange measurements reveal that calcium is involved in the binding of one substrate-water molecule to the oxygen-evolving complex in photosystem II.

Authors:  Garth Hendry; Tom Wydrzynski
Journal:  Biochemistry       Date:  2003-05-27       Impact factor: 3.162

2.  Theoretical evaluation of structural models of the S2 state in the oxygen evolving complex of Photosystem II: protonation states and magnetic interactions.

Authors:  William Ames; Dimitrios A Pantazis; Vera Krewald; Nicholas Cox; Johannes Messinger; Wolfgang Lubitz; Frank Neese
Journal:  J Am Chem Soc       Date:  2011-11-17       Impact factor: 15.419

3.  Intermediates of a polynuclear manganese center involved in photosynthetic oxidation of water.

Authors:  G C Dismukes; Y Siderer
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

4.  Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster.

Authors:  Junko Yano; Jan Kern; Kenneth Sauer; Matthew J Latimer; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Wolfram Saenger; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Science       Date:  2006-11-03       Impact factor: 47.728

5.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

Review 6.  Reflections on substrate water and dioxygen formation.

Authors:  Nicholas Cox; Johannes Messinger
Journal:  Biochim Biophys Acta       Date:  2013-02-01

7.  EPR study of the oxygen evolving complex in His-tagged photosystem II from the cyanobacterium Synechococcus elongatus.

Authors:  A Boussac; M Sugiura; Y Inoue; A W Rutherford
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

8.  Kinetic determination of the fast exchanging substrate water molecule in the S3 state of photosystem II.

Authors:  W Hillier; J Messinger; T Wydrzynski
Journal:  Biochemistry       Date:  1998-12-01       Impact factor: 3.162

Review 9.  FTIR detection of water reactions in the oxygen-evolving centre of photosystem II.

Authors:  Takumi Noguchi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-03-27       Impact factor: 6.237

10.  Oxygen-oxygen bond formation by the Ru-Hbpp water oxidation catalyst occurs solely via an intramolecular reaction pathway.

Authors:  Sophie Romain; Fernando Bozoglian; Xavier Sala; Antoni Llobet
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

View more
  25 in total

Review 1.  Metal ion oxidation state assignment based on coordinating ligand hyperfine interaction.

Authors:  Paul H Oyala; Troy A Stich; R David Britt
Journal:  Photosynth Res       Date:  2015-02-08       Impact factor: 3.573

2.  Tetranuclear [MnIIIMn3IVO4] Complexes as Spectroscopic Models of the S2 State of the Oxygen Evolving Complex in Photosystem II.

Authors:  Heui Beom Lee; Angela A Shiau; Paul H Oyala; David A Marchiori; Sheraz Gul; Ruchira Chatterjee; Junko Yano; R David Britt; Theodor Agapie
Journal:  J Am Chem Soc       Date:  2018-11-30       Impact factor: 15.419

3.  Intramolecular C-H and C-F Bond Oxygenation by Site-Differentiated Tetranuclear Manganese Models of the OEC.

Authors:  Kurtis M Carsch; Graham de Ruiter; Theodor Agapie
Journal:  Inorg Chem       Date:  2017-07-21       Impact factor: 5.165

4.  Thermodynamics of Proton and Electron Transfer in Tetranuclear Clusters with Mn-OH2/OH Motifs Relevant to H2O Activation by the Oxygen Evolving Complex in Photosystem II.

Authors:  Christopher J Reed; Theodor Agapie
Journal:  J Am Chem Soc       Date:  2018-08-16       Impact factor: 15.419

5.  Structure of photosystem II and substrate binding at room temperature.

Authors:  Iris D Young; Mohamed Ibrahim; Ruchira Chatterjee; Sheraz Gul; Franklin Fuller; Sergey Koroidov; Aaron S Brewster; Rosalie Tran; Roberto Alonso-Mori; Thomas Kroll; Tara Michels-Clark; Hartawan Laksmono; Raymond G Sierra; Claudiu A Stan; Rana Hussein; Miao Zhang; Lacey Douthit; Markus Kubin; Casper de Lichtenberg; Pham Long Vo; Håkan Nilsson; Mun Hon Cheah; Dmitriy Shevela; Claudio Saracini; Mackenzie A Bean; Ina Seuffert; Dimosthenis Sokaras; Tsu-Chien Weng; Ernest Pastor; Clemens Weninger; Thomas Fransson; Louise Lassalle; Philipp Bräuer; Pierre Aller; Peter T Docker; Babak Andi; Allen M Orville; James M Glownia; Silke Nelson; Marcin Sikorski; Diling Zhu; Mark S Hunter; Thomas J Lane; Andy Aquila; Jason E Koglin; Joseph Robinson; Mengning Liang; Sébastien Boutet; Artem Y Lyubimov; Monarin Uervirojnangkoorn; Nigel W Moriarty; Dorothee Liebschner; Pavel V Afonine; David G Waterman; Gwyndaf Evans; Philippe Wernet; Holger Dobbek; William I Weis; Axel T Brunger; Petrus H Zwart; Paul D Adams; Athina Zouni; Johannes Messinger; Uwe Bergmann; Nicholas K Sauter; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nature       Date:  2016-11-21       Impact factor: 49.962

6.  Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.

Authors:  Christopher Kupitz; Shibom Basu; Ingo Grotjohann; Raimund Fromme; Nadia A Zatsepin; Kimberly N Rendek; Mark S Hunter; Robert L Shoeman; Thomas A White; Dingjie Wang; Daniel James; Jay-How Yang; Danielle E Cobb; Brenda Reeder; Raymond G Sierra; Haiguang Liu; Anton Barty; Andrew L Aquila; Daniel Deponte; Richard A Kirian; Sadia Bari; Jesse J Bergkamp; Kenneth R Beyerlein; Michael J Bogan; Carl Caleman; Tzu-Chiao Chao; Chelsie E Conrad; Katherine M Davis; Holger Fleckenstein; Lorenzo Galli; Stefan P Hau-Riege; Stephan Kassemeyer; Hartawan Laksmono; Mengning Liang; Lukas Lomb; Stefano Marchesini; Andrew V Martin; Marc Messerschmidt; Despina Milathianaki; Karol Nass; Alexandra Ros; Shatabdi Roy-Chowdhury; Kevin Schmidt; Marvin Seibert; Jan Steinbrener; Francesco Stellato; Lifen Yan; Chunhong Yoon; Thomas A Moore; Ana L Moore; Yulia Pushkar; Garth J Williams; Sébastien Boutet; R Bruce Doak; Uwe Weierstall; Matthias Frank; Henry N Chapman; John C H Spence; Petra Fromme
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

7.  Pulse electron paramagnetic resonance studies of the interaction of methanol with the S2 state of the Mn4O5Ca cluster of photosystem II.

Authors:  Paul H Oyala; Troy A Stich; Jamie A Stull; Fangting Yu; Vincent L Pecoraro; R David Britt
Journal:  Biochemistry       Date:  2014-12-11       Impact factor: 3.162

Review 8.  Artificial photosynthesis: understanding water splitting in nature.

Authors:  Nicholas Cox; Dimitrios A Pantazis; Frank Neese; Wolfgang Lubitz
Journal:  Interface Focus       Date:  2015-06-06       Impact factor: 3.906

9.  Five-coordinate MnIV intermediate in the activation of nature's water splitting cofactor.

Authors:  Maria Chrysina; Eiri Heyno; Yury Kutin; Michael Reus; Håkan Nilsson; Marc M Nowaczyk; Serena DeBeer; Frank Neese; Johannes Messinger; Wolfgang Lubitz; Nicholas Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-07       Impact factor: 11.205

10.  Plasma Membrane-Type Aquaporins from Marine Diatoms Function as CO2/NH3 Channels and Provide Photoprotection.

Authors:  Hiroaki Matsui; Brian M Hopkinson; Kensuke Nakajima; Yusuke Matsuda
Journal:  Plant Physiol       Date:  2018-08-03       Impact factor: 8.340

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.