Literature DB >> 26587711

Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.

James P Hall1,2, Fergus E Poynton3,4, Páraic M Keane1,3, Sarah P Gurung1,2, John A Brazier5, David J Cardin1, Graeme Winter2, Thorfinnur Gunnlaugsson3,4, Igor V Sazanovich6, Michael Towrie6, Christine J Cardin1, John M Kelly3, Susan J Quinn7.   

Abstract

To understand the molecular origins of diseases caused by ultraviolet and visible light, and also to develop photodynamic therapy, it is important to resolve the mechanism of photoinduced DNA damage. Damage to DNA bound to a photosensitizer molecule frequently proceeds by one-electron photo-oxidation of guanine, but the precise dynamics of this process are sensitive to the location and the orientation of the photosensitizer, which are very difficult to define in solution. To overcome this, ultrafast time-resolved infrared (TRIR) spectroscopy was performed on photoexcited ruthenium polypyridyl-DNA crystals, the atomic structure of which was determined by X-ray crystallography. By combining the X-ray and TRIR data we are able to define both the geometry of the reaction site and the rates of individual steps in a reversible photoinduced electron-transfer process. This allows us to propose an individual guanine as the reaction site and, intriguingly, reveals that the dynamics in the crystal state are quite similar to those observed in the solvent medium.

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Year:  2015        PMID: 26587711     DOI: 10.1038/nchem.2369

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  32 in total

1.  Controlled dehydration of a ruthenium complex-DNA crystal induces reversible DNA kinking.

Authors:  James P Hall; Juan Sanchez-Weatherby; Cora Alberti; Caroline Hurtado Quimper; Kyra O'Sullivan; John A Brazier; Graeme Winter; Thomas Sorensen; John M Kelly; David J Cardin; Christine J Cardin
Journal:  J Am Chem Soc       Date:  2014-12-03       Impact factor: 15.419

2.  ULTRA: A Unique Instrument for Time-Resolved Spectroscopy.

Authors:  Gregory M Greetham; Pierre Burgos; Qian Cao; Ian P Clark; Peter S Codd; Richard C Farrow; Michael W George; Moschos Kogimtzis; Pavel Matousek; Anthony W Parker; Mark R Pollard; David A Robinson; Zhi-Jun Xin; Michael Towrie
Journal:  Appl Spectrosc       Date:  2010-12       Impact factor: 2.388

Review 3.  Ruthenium(II) polypyridyl complexes and DNA--from structural probes to cellular imaging and therapeutics.

Authors:  Martin R Gill; Jim A Thomas
Journal:  Chem Soc Rev       Date:  2012-02-07       Impact factor: 54.564

4.  Highly effective DNA photocleavage by novel "rigid" Ru(bpy)(3)-4-nitro- and -4-amino-1,8-naphthalimide conjugates.

Authors:  Gary J Ryan; Susan Quinn; Thorfinnur Gunnlaugsson
Journal:  Inorg Chem       Date:  2007-12-14       Impact factor: 5.165

5.  Crystal structure of Δ-[Ru(bpy)₂dppz]²⁺ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation.

Authors:  Hang Song; Jens T Kaiser; Jacqueline K Barton
Journal:  Nat Chem       Date:  2012-06-10       Impact factor: 24.427

6.  Photo-reactive Ru(II)-oligonucleotide conjugates: influence of an intercalating ligand on the inter- and intra-strand photo-ligation processes.

Authors:  Stéphane Le Gac; Martin Foucart; Pascal Gerbaux; Eric Defrancq; Cécile Moucheron; Andrée Kirsch-De Mesmaeker
Journal:  Dalton Trans       Date:  2010-09-09       Impact factor: 4.390

7.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Photooxidation of guanine by a ruthenium dipyridophenazine complex intercalated in a double-stranded polynucleotide monitored directly by picosecond visible and infrared transient absorption spectroscopy.

Authors:  Benjamin Elias; Caitriona Creely; Gerard W Doorley; Martin M Feeney; Cécile Moucheron; Andrée Kirsch-DeMesmaeker; Joanne Dyer; David C Grills; Michael W George; Pavel Matousek; Anthony W Parker; Michael Towrie; John M Kelly
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

10.  Reversal of a Single Base-Pair Step Controls Guanine Photo-Oxidation by an Intercalating Ruthenium(II) Dipyridophenazine Complex.

Authors:  Páraic M Keane; Fergus E Poynton; James P Hall; Igor V Sazanovich; Michael Towrie; Thorfinnur Gunnlaugsson; Susan J Quinn; Christine J Cardin; John M Kelly
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-11       Impact factor: 15.336

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  18 in total

1.  Transferring the entatic-state principle to copper photochemistry.

Authors:  B Dicke; A Hoffmann; J Stanek; M S Rampp; B Grimm-Lebsanft; F Biebl; D Rukser; B Maerz; D Göries; M Naumova; M Biednov; G Neuber; A Wetzel; S M Hofmann; P Roedig; A Meents; J Bielecki; J Andreasson; K R Beyerlein; H N Chapman; C Bressler; W Zinth; M Rübhausen; S Herres-Pawlis
Journal:  Nat Chem       Date:  2018-01-15       Impact factor: 24.427

2.  Characterizing metal-binding sites in proteins with X-ray crystallography.

Authors:  Katarzyna B Handing; Ewa Niedzialkowska; Ivan G Shabalin; Misty L Kuhn; Heping Zheng; Wladek Minor
Journal:  Nat Protoc       Date:  2018-04-19       Impact factor: 13.491

3.  A ruthenium polypyridyl intercalator stalls DNA replication forks, radiosensitizes human cancer cells and is enhanced by Chk1 inhibition.

Authors:  Martin R Gill; Siti Norain Harun; Swagata Halder; Ramon A Boghozian; Kristijan Ramadan; Haslina Ahmad; Katherine A Vallis
Journal:  Sci Rep       Date:  2016-08-25       Impact factor: 4.379

4.  Photochemically active DNA-intercalating ruthenium and related complexes - insights by combining crystallography and transient spectroscopy.

Authors:  Christine J Cardin; John M Kelly; Susan J Quinn
Journal:  Chem Sci       Date:  2017-04-12       Impact factor: 9.825

5.  A three-in-one-bullet for oesophageal cancer: replication fork collapse, spindle attachment failure and enhanced radiosensitivity generated by a ruthenium(ii) metallo-intercalator.

Authors:  Martin R Gill; Paul J Jarman; Swagata Halder; Michael G Walker; Hiwa K Saeed; Jim A Thomas; Carl Smythe; Kristijan Ramadan; Katherine A Vallis
Journal:  Chem Sci       Date:  2017-11-16       Impact factor: 9.969

6.  Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.

Authors:  James P Hall; Sarah P Gurung; Jessica Henle; Patrick Poidl; Johanna Andersson; Per Lincoln; Graeme Winter; Thomas Sorensen; David J Cardin; John A Brazier; Christine J Cardin
Journal:  Chemistry       Date:  2017-02-06       Impact factor: 5.236

7.  Capturing the radical ion-pair intermediate in DNA guanine oxidation.

Authors:  Jialong Jie; Kunhui Liu; Lidan Wu; Hongmei Zhao; Di Song; Hongmei Su
Journal:  Sci Adv       Date:  2017-06-02       Impact factor: 14.136

8.  A dinuclear ruthenium(ii) phototherapeutic that targets duplex and quadruplex DNA.

Authors:  Stuart A Archer; Ahtasham Raza; Fabian Dröge; Craig Robertson; Alexander J Auty; Dimitri Chekulaev; Julia A Weinstein; Theo Keane; Anthony J H M Meijer; John W Haycock; Sheila MacNeil; James A Thomas
Journal:  Chem Sci       Date:  2019-02-18       Impact factor: 9.825

9.  Photorelease of a metal-binding pharmacophore from a Ru(II) polypyridine complex.

Authors:  Johannes Karges; Ryjul W Stokes; Seth M Cohen
Journal:  Dalton Trans       Date:  2021-03-02       Impact factor: 4.390

10.  Direct observation by time-resolved infrared spectroscopy of the bright and the dark excited states of the [Ru(phen)2(dppz)]2+ light-switch compound in solution and when bound to DNA.

Authors:  Fergus E Poynton; James P Hall; Páraic M Keane; Christine Schwarz; Igor V Sazanovich; Michael Towrie; Thorfinnur Gunnlaugsson; Christine J Cardin; David J Cardin; Susan J Quinn; Conor Long; John M Kelly
Journal:  Chem Sci       Date:  2016-01-27       Impact factor: 9.825

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