Literature DB >> 24089594

Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser.

Lukas Lomb1, Thomas R M Barends, Stephan Kassemeyer, Andrew Aquila, Sascha W Epp, Benjamin Erk, Lutz Foucar, Robert Hartmann, Benedikt Rudek, Daniel Rolles, Artem Rudenko, Robert L Shoeman, Jakob Andreasson, Sasa Bajt, Miriam Barthelmess, Anton Barty, Michael J Bogan, Christoph Bostedt, John D Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Daniel P Deponte, R Bruce Doak, Tomas Ekeberg, Holger Fleckenstein, Petra Fromme, Maike Gebhardt, Heinz Graafsma, Lars Gumprecht, Christina Y Hampton, Andreas Hartmann, Günter Hauser, Helmut Hirsemann, Peter Holl, James M Holton, Mark S Hunter, Wolfgang Kabsch, Nils Kimmel, Richard A Kirian, Mengning Liang, Filipe R N C Maia, Anton Meinhart, Stefano Marchesini, Andrew V Martin, Karol Nass, Christian Reich, Joachim Schulz, M Marvin Seibert, Raymond Sierra, Heike Soltau, John C H Spence, Jan Steinbrener, Francesco Stellato, Stephan Stern, Nicusor Timneanu, Xiaoyu Wang, Georg Weidenspointner, Uwe Weierstall, Thomas A White, Cornelia Wunderer, Henry N Chapman, Joachim Ullrich, Lothar Strüder, Ilme Schlichting.   

Abstract

X-ray free-electron lasers deliver intense femtosecond pulses that promise to yield high resolution diffraction data of nanocrystals before the destruction of the sample by radiation damage. Diffraction intensities of lysozyme nanocrystals collected at the Linac Coherent Light Source using 2 keV photons were used for structure determination by molecular replacement and analyzed for radiation damage as a function of pulse length and fluence. Signatures of radiation damage are observed for pulses as short as 70 fs. Parametric scaling used in conventional crystallography does not account for the observed effects.

Entities:  

Year:  2011        PMID： 24089594      PMCID： PMC3786679          DOI： 10.1103/PhysRevB.84.214111

Source DB:  PubMed          Journal:  Phys Rev B Condens Matter Mater Phys        ISSN： 1098-0121


  17 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  Low-resolution molecular replacement using a six-dimensional search.

Authors:  Qun Liu; Arthur J Weaver; Tao Xiang; Daniel J Thiel; Quan Hao
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-05-23

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

4.  Ultraintense x-ray induced ionization, dissociation, and frustrated absorption in molecular nitrogen.

Authors:  M Hoener; L Fang; O Kornilov; O Gessner; S T Pratt; M Gühr; E P Kanter; C Blaga; C Bostedt; J D Bozek; P H Bucksbaum; C Buth; M Chen; R Coffee; J Cryan; L Dimauro; M Glownia; E Hosler; E Kukk; S R Leone; B McFarland; M Messerschmidt; B Murphy; V Petrovic; D Rolles; N Berrah
Journal:  Phys Rev Lett       Date:  2010-06-23       Impact factor: 9.161

5.  Encapsulation and diffraction-pattern-correction methods to reduce the effect of damage in x-ray diffraction imaging of single biological molecules.

Authors:  Stefan P Hau-Riege; Richard A London; Henry N Chapman; Abraham Szoke; Nicusor Timneanu
Journal:  Phys Rev Lett       Date:  2007-05-09       Impact factor: 9.161

6.  Absorbed dose calculations for macromolecular crystals: improvements to RADDOSE.

Authors:  Karthik S Paithankar; Robin Leslie Owen; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

7.  The catalytic pathway of cytochrome p450cam at atomic resolution.

Authors:  I Schlichting; J Berendzen; K Chu; A M Stock; S A Maves; D E Benson; R M Sweet; D Ringe; G A Petsko; S G Sligar
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

8.  The catalytic pathway of horseradish peroxidase at high resolution.

Authors:  Gunnar I Berglund; Gunilla H Carlsson; Andrew T Smith; Hanna Szöke; Anette Henriksen; Janos Hajdu
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

9.  The minimum crystal size needed for a complete diffraction data set.

Authors:  James M Holton; Kenneth A Frankel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 10.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318
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  49 in total

1.  Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.

Authors:  Jan Kern; Roberto Alonso-Mori; Julia Hellmich; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Jonas Sellberg; Benedikt Lassalle-Kaiser; Richard J Gildea; Pieter Glatzel; Ralf W Grosse-Kunstleve; Matthew J Latimer; Trevor A McQueen; Dörte DiFiore; Alan R Fry; Marc Messerschmidt; Alan Miahnahri; Donald W Schafer; M Marvin Seibert; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Johannes Messinger; Nicholas K Sauter; Athina Zouni; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Predicting the X-ray lifetime of protein crystals.

Authors:  Oliver B Zeldin; Sandor Brockhauser; John Bremridge; James M Holton; Elspeth F Garman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

3.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

4.  Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser.

Authors:  Cornelius Gati; Dominik Oberthuer; Oleksandr Yefanov; Richard D Bunker; Francesco Stellato; Elaine Chiu; Shin-Mei Yeh; Andrew Aquila; Shibom Basu; Richard Bean; Kenneth R Beyerlein; Sabine Botha; Sébastien Boutet; Daniel P DePonte; R Bruce Doak; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Daniel R James; Christopher Kupitz; Lukas Lomb; Marc Messerschmidt; Karol Nass; Kimberly Rendek; Robert L Shoeman; Dingjie Wang; Uwe Weierstall; Thomas A White; Garth J Williams; Nadia A Zatsepin; Petra Fromme; John C H Spence; Kenneth N Goldie; Johannes A Jehle; Peter Metcalf; Anton Barty; Henry N Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

5.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

6.  Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector.

Authors:  H P Stevenson; D P DePonte; A M Makhov; James F Conway; O B Zeldin; S Boutet; G Calero; A E Cohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

7.  XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.

Authors:  Jessica L Thomaston; Rahel A Woldeyes; Takanori Nakane; Ayumi Yamashita; Tomoyuki Tanaka; Kotaro Koiwai; Aaron S Brewster; Benjamin A Barad; Yujie Chen; Thomas Lemmin; Monarin Uervirojnangkoorn; Toshi Arima; Jun Kobayashi; Tetsuya Masuda; Mamoru Suzuki; Michihiro Sugahara; Nicholas K Sauter; Rie Tanaka; Osamu Nureki; Kensuke Tono; Yasumasa Joti; Eriko Nango; So Iwata; Fumiaki Yumoto; James S Fraser; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-23       Impact factor: 11.205

8.  Crystal structure of the pristine peroxidase ferryl center and its relevance to proton-coupled electron transfer.

Authors:  Georges Chreifi; Elizabeth L Baxter; Tzanko Doukov; Aina E Cohen; Scott E McPhillips; Jinhu Song; Yergalem T Meharenna; S Michael Soltis; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

9.  Fast Detection Allows Analysis of the Electronic Structure of Metalloprotein by X-ray Emission Spectroscopy at Room Temperature.

Authors:  Katherine M Davis; Brian A Mattern; Joseph I Pacold; Taisiya Zakharova; Dale Brewe; Irina Kosheleva; Robert W Henning; Timothy J Graber; Steve M Heald; Gerald T Seidler; Yulia Pushkar
Journal:  J Phys Chem Lett       Date:  2012-06-26       Impact factor: 6.475

10.  Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

Authors:  Christian G Roessler; Rakhi Agarwal; Marc Allaire; Roberto Alonso-Mori; Babak Andi; José F R Bachega; Martin Bommer; Aaron S Brewster; Michael C Browne; Ruchira Chatterjee; Eunsun Cho; Aina E Cohen; Matthew Cowan; Sammy Datwani; Victor L Davidson; Jim Defever; Brent Eaton; Richard Ellson; Yiping Feng; Lucien P Ghislain; James M Glownia; Guangye Han; Johan Hattne; Julia Hellmich; Annie Héroux; Mohamed Ibrahim; Jan Kern; Anthony Kuczewski; Henrik T Lemke; Pinghua Liu; Lars Majlof; William M McClintock; Stuart Myers; Silke Nelsen; Joe Olechno; Allen M Orville; Nicholas K Sauter; Alexei S Soares; S Michael Soltis; Heng Song; Richard G Stearns; Rosalie Tran; Yingssu Tsai; Monarin Uervirojnangkoorn; Carrie M Wilmot; Vittal Yachandra; Junko Yano; Erik T Yukl; Diling Zhu; Athina Zouni
Journal:  Structure       Date:  2016-03-17       Impact factor: 5.006
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