Literature DB >> 31029767

Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals.

Guowu Lin1, Simon C Weiss1, Sandra Vergara1, Carlos Camacho2, Guillermo Calero3.   

Abstract

Well-diffracting crystals are essential to obtain relevant structural data that will lead to understanding of RNA Polymerase II (Pol II) transcriptional processes at a molecular level. Here we present a strategy to study Pol II crystals using negative stain transmission electron microscopy (TEM) and a methodology to optimize radiation damage free data collection using free electron laser (FEL) at the Linac Coherent Light Source (LCLS). The use of negative stain TEM allowed visualization and optimization of crystal diffraction by monitoring the lattice quality of crystallization conditions. Nano crystals bearing perfect lattices were seeded and used to grow larger crystals for FEL data collection. Moreover, the use of in house designed crystal loops together with ultra-violet (UV) microscopy for crystal detection facilitated data collection. Such strategy permitted collection of multiple crystals of radiation-free-damage data, resulting in the highest resolution of wild type (WT) Pol II crystals ever observed.
Copyright © 2019. Published by Elsevier Inc.

Entities:  

Keywords:  Free electron laser; Nano-crystals; RNA Polymerase II; Radiation-damage-free data collection

Mesh:

Substances:

Year:  2019        PMID: 31029767      PMCID: PMC7193734          DOI: 10.1016/j.ymeth.2019.04.011

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  44 in total

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Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

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Journal:  Science       Date:  2017-08-03       Impact factor: 47.728

Review 3.  Structural basis of transcription elongation.

Authors:  Fuensanta W Martinez-Rucobo; Patrick Cramer
Journal:  Biochim Biophys Acta       Date:  2012-09-13

4.  Use of transmission electron microscopy to identify nanocrystals of challenging protein targets.

Authors:  Hilary P Stevenson; Alexander M Makhov; Monica Calero; Andrea L Edwards; Oliver B Zeldin; Irimpan I Mathews; Guowu Lin; Christopher O Barnes; Hugo Santamaria; Ted M Ross; S Michael Soltis; Chaitan Khosla; V Nagarajan; James F Conway; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

Review 5.  RNA polymerase fidelity and transcriptional proofreading.

Authors:  Jasmin F Sydow; Patrick Cramer
Journal:  Curr Opin Struct Biol       Date:  2009-11-13       Impact factor: 6.809

Review 6.  Structural Insights into the Eukaryotic Transcription Initiation Machinery.

Authors:  Eva Nogales; Robert K Louder; Yuan He
Journal:  Annu Rev Biophys       Date:  2017-05-22       Impact factor: 12.981

Review 7.  New G-protein-coupled receptor crystal structures: insights and limitations.

Authors:  Brian Kobilka; Gebhard F X Schertler
Journal:  Trends Pharmacol Sci       Date:  2008-01-14       Impact factor: 14.819

8.  Crystal structure of the µ-opioid receptor bound to a morphinan antagonist.

Authors:  Aashish Manglik; Andrew C Kruse; Tong Sun Kobilka; Foon Sun Thian; Jesper M Mathiesen; Roger K Sunahara; Leonardo Pardo; William I Weis; Brian K Kobilka; Sébastien Granier
Journal:  Nature       Date:  2012-03-21       Impact factor: 49.962

9.  High-resolution structure determination by continuous-rotation data collection in MicroED.

Authors:  Brent L Nannenga; Dan Shi; Andrew G W Leslie; Tamir Gonen
Journal:  Nat Methods       Date:  2014-08-03       Impact factor: 28.547

10.  The cryo-electron microscopy structure of human transcription factor IIH.

Authors:  Basil J Greber; Thi Hoang Duong Nguyen; Jie Fang; Pavel V Afonine; Paul D Adams; Eva Nogales
Journal:  Nature       Date:  2017-09-13       Impact factor: 49.962

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  1 in total

Review 1.  Advances in methods for atomic resolution macromolecular structure determination.

Authors:  Michael C Thompson; Todd O Yeates; Jose A Rodriguez
Journal:  F1000Res       Date:  2020-07-02
  1 in total

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