Literature DB >> 28832129

The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.

Irimpan I Mathews1, Kim Allison1, Thomas Robbins, Artem Y Lyubimov1, Monarin Uervirojnangkoorn, Axel T Brunger, Chaitan Khosla, Hasan DeMirci1, Scott E McPhillips1, Michael Hollenbeck1, Michael Soltis1, Aina E Cohen1.   

Abstract

The crystal structure of the trans-acyltransferase (AT) from the disorazole polyketide synthase (PKS) was determined at room temperature to a resolution of 2.5 Å using a new method for the direct delivery of the sample into an X-ray free-electron laser. A novel sample extractor efficiently delivered limited quantities of microcrystals directly from the native crystallization solution into the X-ray beam at room temperature. The AT structure revealed important catalytic features of this core PKS enzyme, including the occurrence of conformational changes around the active site. The implications of these conformational changes for polyketide synthase reaction dynamics are discussed.

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Year:  2017        PMID: 28832129      PMCID: PMC5721673          DOI: 10.1021/acs.biochem.7b00711

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  SEM imaging of liquid jets.

Authors:  Daniel P DePonte; R B Doak; Mark Hunter; Zhenquan Liu; U Weierstall; John C H Spence
Journal:  Micron       Date:  2008-12-30       Impact factor: 2.251

2.  Accessing protein conformational ensembles using room-temperature X-ray crystallography.

Authors:  James S Fraser; Henry van den Bedem; Avi J Samelson; P Therese Lang; James M Holton; Nathaniel Echols; Tom Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-14       Impact factor: 11.205

3.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

4.  Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector.

Authors:  H P Stevenson; D P DePonte; A M Makhov; James F Conway; O B Zeldin; S Boutet; G Calero; A E Cohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

5.  Structure and mechanism of the trans-acting acyltransferase from the disorazole synthase.

Authors:  Fong T Wong; Xi Jin; Irimpan I Mathews; David E Cane; Chaitan Khosla
Journal:  Biochemistry       Date:  2011-07-05       Impact factor: 3.162

Review 6.  Structures and mechanisms of polyketide synthases.

Authors:  Chaitan Khosla
Journal:  J Org Chem       Date:  2009-09-04       Impact factor: 4.354

Review 7.  Structure and mechanism of assembly line polyketide synthases.

Authors:  Thomas Robbins; Yu-Chen Liu; David E Cane; Chaitan Khosla
Journal:  Curr Opin Struct Biol       Date:  2016-06-05       Impact factor: 6.809

Review 8.  Steps towards the synthetic biology of polyketide biosynthesis.

Authors:  Matthew Cummings; Rainer Breitling; Eriko Takano
Journal:  FEMS Microbiol Lett       Date:  2014-01-07       Impact factor: 2.742

9.  A double-hotdog with a new trick: structure and mechanism of the trans-acyltransferase polyketide synthase enoyl-isomerase.

Authors:  Darren C Gay; Philip J Spear; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2014-08-14       Impact factor: 5.100

10.  Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II.

Authors:  Raymond G Sierra; Cornelius Gati; Hartawan Laksmono; E Han Dao; Sheraz Gul; Franklin Fuller; Jan Kern; Ruchira Chatterjee; Mohamed Ibrahim; Aaron S Brewster; Iris D Young; Tara Michels-Clark; Andrew Aquila; Mengning Liang; Mark S Hunter; Jason E Koglin; Sébastien Boutet; Elia A Junco; Brandon Hayes; Michael J Bogan; Christina Y Hampton; Elisabetta V Puglisi; Nicholas K Sauter; Claudiu A Stan; Athina Zouni; Junko Yano; Vittal K Yachandra; S Michael Soltis; Joseph D Puglisi; Hasan DeMirci
Journal:  Nat Methods       Date:  2015-11-30       Impact factor: 28.547

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  7 in total

Review 1.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

2.  Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.

Authors:  Michael C Thompson; Duilio Cascio; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-24       Impact factor: 7.652

3.  3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating.

Authors:  Austin Echelmeier; Daihyun Kim; Jorvani Cruz Villarreal; Jesse Coe; Sebastian Quintana; Gerrit Brehm; Ana Egatz-Gomez; Reza Nazari; Raymond G Sierra; Jason E Koglin; Alexander Batyuk; Mark S Hunter; Sébastien Boutet; Nadia Zatsepin; Richard A Kirian; Thomas D Grant; Petra Fromme; Alexandra Ros
Journal:  J Appl Crystallogr       Date:  2019-08-29       Impact factor: 3.304

4.  Engineering site-selective incorporation of fluorine into polyketides.

Authors:  Sasilada Sirirungruang; Omer Ad; Thomas M Privalsky; Swetha Ramesh; Joel L Sax; Hongjun Dong; Edward E K Baidoo; Bashar Amer; Chaitan Khosla; Michelle C Y Chang
Journal:  Nat Chem Biol       Date:  2022-07-11       Impact factor: 16.174

Review 5.  Acyltransferases as Tools for Polyketide Synthase Engineering.

Authors:  Ewa Maria Musiol-Kroll; Wolfgang Wohlleben
Journal:  Antibiotics (Basel)       Date:  2018-07-18

6.  Polysaccharide-Based Injection Matrix for Serial Crystallography.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2020-05-08       Impact factor: 5.923

Review 7.  Advances in methods for atomic resolution macromolecular structure determination.

Authors:  Michael C Thompson; Todd O Yeates; Jose A Rodriguez
Journal:  F1000Res       Date:  2020-07-02
  7 in total

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