Literature DB >> 24907530

Principles and applications of TAL effectors for plant physiology and metabolism.

Adam J Bogdanove1.   

Abstract

Recent advances in DNA targeting allow unprecedented control over gene function and expression. Targeting based on TAL effectors is arguably the most promising for systems biology and metabolic engineering. Multiple, orthogonal TAL-effector reagents of different types can be used in the same cell. Furthermore, variation in base preferences of the individual structural repeats that make up the TAL effector DNA recognition domain makes targeting stringency tunable. Realized applications range from genome editing to epigenome modification to targeted gene regulation to chromatin labeling and capture. The principles that govern TAL effector DNA recognition make TAL effectors well suited for applications relevant to plant physiology and metabolism. TAL effector targeting has merits that are distinct from those of the RNA-based DNA targeting CRISPR/Cas9 system.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Year:  2014        PMID: 24907530      PMCID: PMC4086460          DOI: 10.1016/j.pbi.2014.05.007

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  52 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

Review 2.  Cas9 as a versatile tool for engineering biology.

Authors:  Prashant Mali; Kevin M Esvelt; George M Church
Journal:  Nat Methods       Date:  2013-10       Impact factor: 28.547

Review 3.  TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins.

Authors:  Erin L Doyle; Barry L Stoddard; Daniel F Voytas; Adam J Bogdanove
Journal:  Trends Cell Biol       Date:  2013-05-23       Impact factor: 20.808

4.  TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants.

Authors:  Toni Wendt; Preben Bach Holm; Colby G Starker; Michelle Christian; Daniel F Voytas; Henrik Brinch-Pedersen; Inger Bæksted Holme
Journal:  Plant Mol Biol       Date:  2013-05-21       Impact factor: 4.076

5.  Breaking the DNA-binding code of Ralstonia solanacearum TAL effectors provides new possibilities to generate plant resistance genes against bacterial wilt disease.

Authors:  Orlando de Lange; Tom Schreiber; Niklas Schandry; Jara Radeck; Karl Heinz Braun; Julia Koszinowski; Holger Heuer; Annett Strauß; Thomas Lahaye
Journal:  New Phytol       Date:  2013-05-21       Impact factor: 10.151

6.  Artificial repressors for controlling gene expression in bacteria.

Authors:  Mark C Politz; Matthew F Copeland; Brian F Pfleger
Journal:  Chem Commun (Camb)       Date:  2012-12-10       Impact factor: 6.222

7.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

8.  Quantitative analysis of TALE-DNA interactions suggests polarity effects.

Authors:  Joshua F Meckler; Mital S Bhakta; Moon-Soo Kim; Robert Ovadia; Chris H Habrian; Artem Zykovich; Abigail Yu; Sarah H Lockwood; Robert Morbitzer; Janett Elsäesser; Thomas Lahaye; David J Segal; Enoch P Baldwin
Journal:  Nucleic Acids Res       Date:  2013-02-13       Impact factor: 16.971

9.  TALE-mediated modulation of transcriptional enhancers in vivo.

Authors:  Justin Crocker; David L Stern
Journal:  Nat Methods       Date:  2013-06-30       Impact factor: 28.547

10.  Optical control of mammalian endogenous transcription and epigenetic states.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro Trevino; Patrick D Hsu; Matthias Heidenreich; Le Cong; Randall J Platt; David A Scott; George M Church; Feng Zhang
Journal:  Nature       Date:  2013-08-23       Impact factor: 49.962

View more
  7 in total

1.  The effect of increasing numbers of repeats on TAL effector DNA binding specificity.

Authors:  Fabio C Rinaldi; Lindsey A Doyle; Barry L Stoddard; Adam J Bogdanove
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

Review 2.  Zebrafish: a new companion for translational research in oncology.

Authors:  Jorge Barriuso; Raghavendar Nagaraju; Adam Hurlstone
Journal:  Clin Cancer Res       Date:  2015-01-08       Impact factor: 12.531

Review 3.  RNA Interference (RNAi) as a Potential Tool for Control of Mycotoxin Contamination in Crop Plants: Concepts and Considerations.

Authors:  Rajtilak Majumdar; Kanniah Rajasekaran; Jeffrey W Cary
Journal:  Front Plant Sci       Date:  2017-02-14       Impact factor: 5.753

Review 4.  Recent advances in developing molecular tools for targeted genome engineering of mammalian cells.

Authors:  Kwang-il Lim
Journal:  BMB Rep       Date:  2015-01       Impact factor: 4.778

Review 5.  Effector bottleneck: microbial reprogramming of parasitized host cell transcription by epigenetic remodeling of chromatin structure.

Authors:  Sara H Sinclair; Kristen E Rennoll-Bankert; J S Dumler
Journal:  Front Genet       Date:  2014-08-14       Impact factor: 4.599

6.  A quick guide to CRISPR sgRNA design tools.

Authors:  Vincent A Brazelton; Scott Zarecor; David A Wright; Yuan Wang; Jie Liu; Keting Chen; Bing Yang; Carolyn J Lawrence-Dill
Journal:  GM Crops Food       Date:  2015       Impact factor: 3.074

Review 7.  Plant SWEETs: from sugar transport to plant-pathogen interaction and more unexpected physiological roles.

Authors:  Richard Breia; Artur Conde; Hélder Badim; Ana Margarida Fortes; Hernâni Gerós; Antonio Granell
Journal:  Plant Physiol       Date:  2021-06-11       Impact factor: 8.340

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.