Literature DB >> 23689819

TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants.

Toni Wendt1, Preben Bach Holm, Colby G Starker, Michelle Christian, Daniel F Voytas, Henrik Brinch-Pedersen, Inger Bæksted Holme.   

Abstract

Transcription activator-like effector nucleases (TALENs) enable targeted mutagenesis in a variety of organisms. The primary advantage of TALENs over other sequence-specific nucleases, namely zinc finger nucleases and meganucleases, lies in their ease of assembly, reliability of function, and their broad targeting range. Here we report the assembly of several TALENs for a specific genomic locus in barley. The cleavage activity of individual TALENs was first tested in vivo using a yeast-based, single-strand annealing assay. The most efficient TALEN was then selected for barley transformation. Analysis of the resulting transformants showed that TALEN-induced double strand breaks led to the introduction of short deletions at the target site. Additional analysis revealed that each barley transformant contained a range of different mutations, indicating that mutations occurred independently in different cells.

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Year:  2013        PMID: 23689819     DOI: 10.1007/s11103-013-0078-4

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  29 in total

1.  A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells.

Authors:  Jean-Charles Epinat; Sylvain Arnould; Patrick Chames; Pascal Rochaix; Dominique Desfontaines; Clémence Puzin; Amélie Patin; Alexandre Zanghellini; Frédéric Pâques; Emmanuel Lacroix
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

2.  Breaking news: plants mutate right on target.

Authors:  Holger Puchta; Barbara Hohn
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-16       Impact factor: 11.205

3.  The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

Authors:  Daniela Schulte; Timothy J Close; Andreas Graner; Peter Langridge; Takashi Matsumoto; Gary Muehlbauer; Kazuhiro Sato; Alan H Schulman; Robbie Waugh; Roger P Wise; Nils Stein
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

4.  Rapid and efficient gene modification in rice and Brachypodium using TALENs.

Authors:  Qiwei Shan; Yanpeng Wang; Kunling Chen; Zhen Liang; Jun Li; Yi Zhang; Kang Zhang; Jinxing Liu; Daniel F Voytas; Xuelian Zheng; Yong Zhang; Caixia Gao
Journal:  Mol Plant       Date:  2013-01-02       Impact factor: 13.164

5.  A physical, genetic and functional sequence assembly of the barley genome.

Authors:  Klaus F X Mayer; Robbie Waugh; John W S Brown; Alan Schulman; Peter Langridge; Matthias Platzer; Geoffrey B Fincher; Gary J Muehlbauer; Kazuhiro Sato; Timothy J Close; Roger P Wise; Nils Stein
Journal:  Nature       Date:  2012-10-17       Impact factor: 49.962

6.  Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues.

Authors:  Michelle L Christian; Zachary L Demorest; Colby G Starker; Mark J Osborn; Michael D Nyquist; Yong Zhang; Daniel F Carlson; Philip Bradley; Adam J Bogdanove; Daniel F Voytas
Journal:  PLoS One       Date:  2012-09-24       Impact factor: 3.240

7.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

8.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

9.  In vivo genome editing using a high-efficiency TALEN system.

Authors:  Victoria M Bedell; Ying Wang; Jarryd M Campbell; Tanya L Poshusta; Colby G Starker; Randall G Krug; Wenfang Tan; Sumedha G Penheiter; Alvin C Ma; Anskar Y H Leung; Scott C Fahrenkrug; Daniel F Carlson; Daniel F Voytas; Karl J Clark; Jeffrey J Essner; Stephen C Ekker
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

10.  High mature grain phytase activity in the Triticeae has evolved by duplication followed by neofunctionalization of the purple acid phosphatase phytase (PAPhy) gene.

Authors:  Claus Krogh Madsen; Giuseppe Dionisio; Inger Bæksted Holme; Preben Bach Holm; Henrik Brinch-Pedersen
Journal:  J Exp Bot       Date:  2013-08       Impact factor: 6.992

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  38 in total

Review 1.  Targeted genome modification technologies and their applications in crop improvements.

Authors:  Kunling Chen; Caixia Gao
Journal:  Plant Cell Rep       Date:  2013-11-24       Impact factor: 4.570

Review 2.  Genetically modified (GM) crops: milestones and new advances in crop improvement.

Authors:  Ayushi Kamthan; Abira Chaudhuri; Mohan Kamthan; Asis Datta
Journal:  Theor Appl Genet       Date:  2016-07-05       Impact factor: 5.699

Review 3.  CRISPR-based genome editing in wheat: a comprehensive review and future prospects.

Authors:  Rakesh Kumar; Amandeep Kaur; Ankita Pandey; H M Mamrutha; G P Singh
Journal:  Mol Biol Rep       Date:  2019-04-02       Impact factor: 2.316

4.  A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation.

Authors:  Levi G Lowder; Dengwei Zhang; Nicholas J Baltes; Joseph W Paul; Xu Tang; Xuelian Zheng; Daniel F Voytas; Tzung-Fu Hsieh; Yong Zhang; Yiping Qi
Journal:  Plant Physiol       Date:  2015-08-21       Impact factor: 8.340

5.  Targeted mutagenesis of the tomato PROCERA gene using transcription activator-like effector nucleases.

Authors:  Vai S Lor; Colby G Starker; Daniel F Voytas; David Weiss; Neil E Olszewski
Journal:  Plant Physiol       Date:  2014-09-12       Impact factor: 8.340

6.  Genome editing in rice and wheat using the CRISPR/Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Caixia Gao
Journal:  Nat Protoc       Date:  2014-09-18       Impact factor: 13.491

7.  Evaluation of the mature grain phytase candidate HvPAPhy_a gene in barley (Hordeum vulgare L.) using CRISPR/Cas9 and TALENs.

Authors:  Inger B Holme; Toni Wendt; Javier Gil-Humanes; Lise C Deleuran; Colby G Starker; Daniel F Voytas; Henrik Brinch-Pedersen
Journal:  Plant Mol Biol       Date:  2017-07-28       Impact factor: 4.076

Review 8.  Progress of targeted genome modification approaches in higher plants.

Authors:  Teodoro Cardi; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2016-03-29       Impact factor: 4.570

9.  Genome editing for crop improvement: Challenges and opportunities.

Authors:  Naglaa A Abdallah; Channapatna S Prakash; Alan G McHughen
Journal:  GM Crops Food       Date:  2015       Impact factor: 3.074

Review 10.  New breeding technique "genome editing" for crop improvement: applications, potentials and challenges.

Authors:  Supriya B Aglawe; Kalyani M Barbadikar; Satendra K Mangrauthia; M Sheshu Madhav
Journal:  3 Biotech       Date:  2018-07-23       Impact factor: 2.406

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