Literature DB >> 23707478

TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins.

Erin L Doyle1, Barry L Stoddard, Daniel F Voytas, Adam J Bogdanove.   

Abstract

Transcription activator-like (TAL) effectors are transcription factors injected into plant cells by pathogenic bacteria of the genus Xanthomonas. They function as virulence factors by activating host genes important for disease, or as avirulence factors by turning on genes that provide resistance. DNA-binding specificity is encoded by polymorphic repeats in each protein that correspond one-to-one with different nucleotides. This code has facilitated target identification and opened new avenues for engineering disease resistance. It has also enabled TAL effector customization for targeted gene control, genome editing, and other applications. This article reviews the structural basis for TAL effector-DNA specificity, the impact of the TAL effector-DNA code on plant pathology and engineered resistance, and recent accomplishments and future challenges in TAL effector-based DNA targeting.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA targeting; TAL effector nucleases; crystal structure; gene therapy; plant disease; resistance genes; susceptibility genes

Mesh:

Substances:

Year:  2013        PMID: 23707478      PMCID: PMC3729746          DOI: 10.1016/j.tcb.2013.04.003

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  77 in total

1.  Crystal structure of a TALE protein reveals an extended N-terminal DNA binding region.

Authors:  Haishan Gao; Xiaojing Wu; Jijie Chai; Zhifu Han
Journal:  Cell Res       Date:  2012-11-13       Impact factor: 25.617

2.  Knockout mice created by TALEN-mediated gene targeting.

Authors:  Young Hoon Sung; In-Jeoung Baek; Duk Hyoung Kim; Jisun Jeon; Jaehoon Lee; Kyunghee Lee; Daewon Jeong; Jin-Soo Kim; Han-Woong Lee
Journal:  Nat Biotechnol       Date:  2013-01       Impact factor: 54.908

3.  RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome.

Authors:  Tina Strauss; Remco M P van Poecke; Annett Strauss; Patrick Römer; Gerald V Minsavage; Sylvia Singh; Christina Wolf; Axel Strauss; Seungill Kim; Hyun-Ah Lee; Seon-In Yeom; Martin Parniske; Robert E Stall; Jeffrey B Jones; Doil Choi; Marcel Prins; Thomas Lahaye
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-06       Impact factor: 11.205

4.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

5.  Specific DNA-RNA hybrid recognition by TAL effectors.

Authors:  Ping Yin; Dong Deng; Chuangye Yan; Xiaojing Pan; Jianzhong Jeff Xi; Nieng Yan; Yigong Shi
Journal:  Cell Rep       Date:  2012-09-27       Impact factor: 9.423

6.  Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.

Authors:  Valérie Verdier; Lindsay R Triplett; Aaron W Hummel; Rene Corral; R Andres Cernadas; Clarice L Schmidt; Adam J Bogdanove; Jan E Leach
Journal:  New Phytol       Date:  2012-10-18       Impact factor: 10.151

7.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

8.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

9.  Transcription activator-like effector nucleases enable efficient plant genome engineering.

Authors:  Yong Zhang; Feng Zhang; Xiaohong Li; Joshua A Baller; Yiping Qi; Colby G Starker; Adam J Bogdanove; Daniel F Voytas
Journal:  Plant Physiol       Date:  2012-11-02       Impact factor: 8.340

10.  Chimeric TALE recombinases with programmable DNA sequence specificity.

Authors:  Andrew C Mercer; Thomas Gaj; Roberta P Fuller; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2012-09-26       Impact factor: 16.971

View more
  53 in total

1.  GamR, the LysR-Type Galactose Metabolism Regulator, Regulates hrp Gene Expression via Transcriptional Activation of Two Key hrp Regulators, HrpG and HrpX, in Xanthomonas oryzae pv. oryzae.

Authors:  M Mamunur Rashid; Yumi Ikawa; Seiji Tsuge
Journal:  Appl Environ Microbiol       Date:  2016-06-13       Impact factor: 4.792

Review 2.  Tools for TAL effector design and target prediction.

Authors:  Nicholas J Booher; Adam J Bogdanove
Journal:  Methods       Date:  2014-06-27       Impact factor: 3.608

Review 3.  Toxoplasma Effectors Targeting Host Signaling and Transcription.

Authors:  Mohamed-Ali Hakimi; Philipp Olias; L David Sibley
Journal:  Clin Microbiol Rev       Date:  2017-07       Impact factor: 26.132

Review 4.  Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes.

Authors:  Matthew F Copeland; Mark C Politz; Brian F Pfleger
Journal:  Curr Opin Biotechnol       Date:  2014-03-12       Impact factor: 9.740

5.  Assembly of long error-prone reads using de Bruijn graphs.

Authors:  Yu Lin; Jeffrey Yuan; Mikhail Kolmogorov; Max W Shen; Mark Chaisson; Pavel A Pevzner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-12       Impact factor: 11.205

6.  RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis.

Authors:  Alejandra Muñoz-Bodnar; Alvaro L Perez-Quintero; Fabio Gomez-Cano; Juliana Gil; Richard Michelmore; Adriana Bernal; Boris Szurek; Camilo Lopez
Journal:  Plant Cell Rep       Date:  2014-08-15       Impact factor: 4.570

Review 7.  Bacterial disease management: challenges, experience, innovation and future prospects: Challenges in Bacterial Molecular Plant Pathology.

Authors:  George W Sundin; Luisa F Castiblanco; Xiaochen Yuan; Quan Zeng; Ching-Hong Yang
Journal:  Mol Plant Pathol       Date:  2016-08-08       Impact factor: 5.663

8.  Principles and applications of TAL effectors for plant physiology and metabolism.

Authors:  Adam J Bogdanove
Journal:  Curr Opin Plant Biol       Date:  2014-06-05       Impact factor: 7.834

9.  The effect of increasing numbers of repeats on TAL effector DNA binding specificity.

Authors:  Fabio C Rinaldi; Lindsey A Doyle; Barry L Stoddard; Adam J Bogdanove
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

Review 10.  Infection processes of xylem-colonizing pathogenic bacteria: possible explanations for the scarcity of qualitative disease resistance genes against them in crops.

Authors:  Chungyun Bae; Sang Wook Han; Yu-Rim Song; Bo-Young Kim; Hyung-Jin Lee; Je-Min Lee; Inhwa Yeam; Sunggi Heu; Chang-Sik Oh
Journal:  Theor Appl Genet       Date:  2015-04-28       Impact factor: 5.699

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.