Literature DB >> 24076990

Cas9 as a versatile tool for engineering biology.

Prashant Mali1, Kevin M Esvelt, George M Church.   

Abstract

RNA-guided Cas9 nucleases derived from clustered regularly interspaced short palindromic repeats (CRISPR)-Cas systems have dramatically transformed our ability to edit the genomes of diverse organisms. We believe tools and techniques based on Cas9, a single unifying factor capable of colocalizing RNA, DNA and protein, will grant unprecedented control over cellular organization, regulation and behavior. Here we describe the Cas9 targeting methodology, detail current and prospective engineering advances and suggest potential applications ranging from basic science to the clinic.

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Year:  2013        PMID: 24076990      PMCID: PMC4051438          DOI: 10.1038/nmeth.2649

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  75 in total

Review 1.  RNA-guided genetic silencing systems in bacteria and archaea.

Authors:  Blake Wiedenheft; Samuel H Sternberg; Jennifer A Doudna
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

Review 2.  CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation.

Authors:  Devaki Bhaya; Michelle Davison; Rodolphe Barrangou
Journal:  Annu Rev Genet       Date:  2011       Impact factor: 16.830

3.  Monomeric site-specific nucleases for genome editing.

Authors:  Benjamin P Kleinstiver; Jason M Wolfs; Tomasz Kolaczyk; Alanna K Roberts; Sherry X Hu; David R Edgell
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

4.  Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence.

Authors:  Ekaterina Semenova; Matthijs M Jore; Kirill A Datsenko; Anna Semenova; Edze R Westra; Barry Wanner; John van der Oost; Stan J J Brouns; Konstantin Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

5.  Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor.

Authors:  Wulan Deng; Jongjoo Lee; Hongxin Wang; Jeff Miller; Andreas Reik; Philip D Gregory; Ann Dean; Gerd A Blobel
Journal:  Cell       Date:  2012-06-08       Impact factor: 41.582

6.  Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

Authors:  Caryn R Hale; Sonali Majumdar; Joshua Elmore; Neil Pfister; Mark Compton; Sara Olson; Alissa M Resch; Claiborne V C Glover; Brenton R Graveley; Rebecca M Terns; Michael P Terns
Journal:  Mol Cell       Date:  2012-01-05       Impact factor: 17.970

7.  Precision genome engineering with programmable DNA-nicking enzymes.

Authors:  Eunji Kim; Sojung Kim; Duk Hyoung Kim; Beom-Soon Choi; Ik-Young Choi; Jin-Soo Kim
Journal:  Genome Res       Date:  2012-04-20       Impact factor: 9.043

8.  Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme.

Authors:  Jianbin Wang; Geoffrey Friedman; Yannick Doyon; Nathaniel S Wang; Carrie Jiaxin Li; Jeffrey C Miller; Kevin L Hua; Jenny Jiacheng Yan; Joshua E Babiarz; Philip D Gregory; Michael C Holmes
Journal:  Genome Res       Date:  2012-03-20       Impact factor: 9.043

9.  In vivo genome editing restores haemostasis in a mouse model of haemophilia.

Authors:  Hojun Li; Virginia Haurigot; Yannick Doyon; Tianjian Li; Sunnie Y Wong; Anand S Bhagwat; Nirav Malani; Xavier M Anguela; Rajiv Sharma; Lacramiora Ivanciu; Samuel L Murphy; Jonathan D Finn; Fayaz R Khazi; Shangzhen Zhou; David E Paschon; Edward J Rebar; Frederic D Bushman; Philip D Gregory; Michael C Holmes; Katherine A High
Journal:  Nature       Date:  2011-06-26       Impact factor: 49.962

10.  Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.

Authors:  Cherie L Ramirez; Michael T Certo; Claudio Mussolino; Mathew J Goodwin; Thomas J Cradick; Anton P McCaffrey; Toni Cathomen; Andrew M Scharenberg; J Keith Joung
Journal:  Nucleic Acids Res       Date:  2012-02-28       Impact factor: 16.971

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  506 in total

1.  CRISPR/Cas9-Mediated Knockout of DNAJC14 Verifies This Chaperone as a Pivotal Host Factor for RNA Replication of Pestiviruses.

Authors:  O Isken; A Postel; B Bruhn; E Lattwein; P Becher; N Tautz
Journal:  J Virol       Date:  2019-02-19       Impact factor: 5.103

2.  Protein engineering of Cas9 for enhanced function.

Authors:  Benjamin L Oakes; Dana C Nadler; David F Savage
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

3.  Genome editing in human stem cells.

Authors:  Susan M Byrne; Prashant Mali; George M Church
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

4.  Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.

Authors:  Eric A Josephs; D Dewran Kocak; Christopher J Fitzgibbon; Joshua McMenemy; Charles A Gersbach; Piotr E Marszalek
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

Review 5.  State-of-the-art human gene therapy: part I. Gene delivery technologies.

Authors:  Dan Wang; Guangping Gao
Journal:  Discov Med       Date:  2014 Jul-Aug       Impact factor: 2.970

6.  Long-term culture and cloning of primary human bronchial basal cells that maintain multipotent differentiation capacity and CFTR channel function.

Authors:  Jennifer R Peters-Hall; Melissa L Coquelin; Michael J Torres; Ryan LaRanger; Busola R Alabi; Sei Sho; Jose F Calva-Moreno; Philip J Thomas; Jerry W Shay
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2018-05-03       Impact factor: 5.464

Review 7.  CRISPR-Cas9: A multifaceted therapeutic strategy for cancer treatment.

Authors:  Itishree Kaushik; Sharavan Ramachandran; Sanjay K Srivastava
Journal:  Semin Cell Dev Biol       Date:  2019-05-04       Impact factor: 7.727

Review 8.  Trafficking of endosomal Toll-like receptors.

Authors:  Bettina L Lee; Gregory M Barton
Journal:  Trends Cell Biol       Date:  2014-01-15       Impact factor: 20.808

Review 9.  Sound strategies for hearing restoration.

Authors:  Gwenaëlle S G Géléoc; Jeffrey R Holt
Journal:  Science       Date:  2014-05-09       Impact factor: 47.728

10.  Targeted genome editing in Aedes aegypti using TALENs.

Authors:  Azadeh Aryan; Kevin M Myles; Zach N Adelman
Journal:  Methods       Date:  2014-02-18       Impact factor: 3.608

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