Literature DB >> 24900642

Metal impurities cause false positives in high-throughput screening campaigns.

Johannes C Hermann1, Yingsi Chen1, Charles Wartchow1, John Menke1, Lin Gao1, Shelley K Gleason1, Nancy-Ellen Haynes1, Nathan Scott1, Ann Petersen1, Stephen Gabriel1, Binh Vu1, Kelly M George1, Arjun Narayanan1, Shirley H Li1, Hong Qian1, Nanda Beatini1, Linghao Niu1, Qing-Fen Gan1.   

Abstract

Organic impurities in compound libraries are known to often cause false-positive signals in screening campaigns for new leads, but organic impurities do not fully account for all false-positive results. We discovered inorganic impurities in our screening library that can also cause positive signals for a variety of targets and/or readout systems, including biochemical and biosensor assays. We investigated in depth the example of zinc for a specific project and in retrospect in various HTS screens at Roche and propose a straightforward counter screen using the chelator TPEN to rule out inhibition caused by zinc.

Entities:  

Keywords:  HTS; Jak3; Pad4; Ras; assay interference; false positive; lead identification; promiscuous inhibitor; zinc

Year:  2012        PMID: 24900642      PMCID: PMC4027514          DOI: 10.1021/ml3003296

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  29 in total

1.  A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening.

Authors:  Susan L McGovern; Emilia Caselli; Nikolaus Grigorieff; Brian K Shoichet
Journal:  J Med Chem       Date:  2002-04-11       Impact factor: 7.446

Review 2.  High-throughput screening: new technology for the 21st century.

Authors:  R P Hertzberg; A J Pope
Journal:  Curr Opin Chem Biol       Date:  2000-08       Impact factor: 8.822

Review 3.  Metalloregulatory proteins: metal selectivity and allosteric switching.

Authors:  Hermes Reyes-Caballero; Gregory C Campanello; David P Giedroc
Journal:  Biophys Chem       Date:  2011-04-05       Impact factor: 2.352

4.  NMR-based quality control approach for the identification of false positives and false negatives in high throughput screening.

Authors:  Claudio Dalvit; Dannica Caronni; Nicola Mongelli; Marina Veronesi; Anna Vulpetti
Journal:  Curr Drug Discov Technol       Date:  2006-06

5.  HTS promiscuity analyses for accelerating decision making.

Authors:  Alexander Böcker; Pierre R Bonneau; Paul J Edwards
Journal:  J Biomol Screen       Date:  2011-06-16

6.  High-throughput screening for drug discovery.

Authors:  J R Broach; J Thorner
Journal:  Nature       Date:  1996-11-07       Impact factor: 49.962

Review 7.  Zn2+: an endogenous modulator of ligand- and voltage-gated ion channels.

Authors:  N L Harrison; S J Gibbons
Journal:  Neuropharmacology       Date:  1994-08       Impact factor: 5.250

8.  Protein arginine deiminase 4: a target for an epigenetic cancer therapy.

Authors:  Jessica L Slack; Corey P Causey; Paul R Thompson
Journal:  Cell Mol Life Sci       Date:  2010-08-13       Impact factor: 9.261

9.  Development of a 384-well colorimetric assay to quantify hydrogen peroxide generated by the redox cycling of compounds in the presence of reducing agents.

Authors:  Paul A Johnston; Karina M Soares; Sunita N Shinde; Caleb A Foster; Tong Ying Shun; Harold K Takyi; Peter Wipf; John S Lazo
Journal:  Assay Drug Dev Technol       Date:  2008-08       Impact factor: 1.738

10.  Profiling the NIH Small Molecule Repository for compounds that generate H2O2 by redox cycling in reducing environments.

Authors:  Karina M Soares; Nicole Blackmon; Tong Ying Shun; Sunita N Shinde; Harold K Takyi; Peter Wipf; John S Lazo; Paul A Johnston
Journal:  Assay Drug Dev Technol       Date:  2010-04       Impact factor: 1.738

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  24 in total

1.  Oxidative Reactivities of 2-Furylquinolines: Ubiquitous Scaffolds in Common High-Throughput Screening Libraries.

Authors:  Margaret E Olson; Daniel Abate-Pella; Angela L Perkins; Ming Li; Michael A Carpenter; Anurag Rathore; Reuben S Harris; Daniel A Harki
Journal:  J Med Chem       Date:  2015-09-11       Impact factor: 7.446

2.  Post-HTS case report and structural alert: Promiscuous 4-aroyl-1,5-disubstituted-3-hydroxy-2H-pyrrol-2-one actives verified by ALARM NMR.

Authors:  Jayme L Dahlin; J Willem M Nissink; Subhashree Francis; Jessica M Strasser; Kristen John; Zhiguo Zhang; Michael A Walters
Journal:  Bioorg Med Chem Lett       Date:  2015-08-10       Impact factor: 2.823

Review 3.  Oncogenic protein interfaces: small molecules, big challenges.

Authors:  Tracy L Nero; Craig J Morton; Jessica K Holien; Jerome Wielens; Michael W Parker
Journal:  Nat Rev Cancer       Date:  2014-03-13       Impact factor: 60.716

4.  Chemical Probe Identification Platform for Orphan GPCRs Using Focused Compound Screening: GPR39 as a Case Example.

Authors:  Markus Boehm; David Hepworth; Paula M Loria; Lisa D Norquay; Kevin J Filipski; Janice E Chin; Kimberly O Cameron; Martin Brenner; Peter Bonnette; Shawn Cabral; Edward Conn; David C Ebner; Denise Gautreau; John Hadcock; Esther C Y Lee; Alan M Mathiowetz; Michelle Morin; Lucy Rogers; Aaron Smith; Maria VanVolkenburg; Philip A Carpino
Journal:  ACS Med Chem Lett       Date:  2013-09-16       Impact factor: 4.345

Review 5.  Mitigating risk in academic preclinical drug discovery.

Authors:  Jayme L Dahlin; James Inglese; Michael A Walters
Journal:  Nat Rev Drug Discov       Date:  2015-04       Impact factor: 84.694

6.  Reproducibility: Check your chemistry.

Authors:  Monya Baker
Journal:  Nature       Date:  2017-08-23       Impact factor: 49.962

Review 7.  Mechanistic enzymology in drug discovery: a fresh perspective.

Authors:  Geoffrey A Holdgate; Thomas D Meek; Rachel L Grimley
Journal:  Nat Rev Drug Discov       Date:  2017-12-01       Impact factor: 84.694

Review 8.  The essential roles of chemistry in high-throughput screening triage.

Authors:  Jayme L Dahlin; Michael A Walters
Journal:  Future Med Chem       Date:  2014-07       Impact factor: 3.808

Review 9.  Matching the power of high throughput screening to the chemical diversity of natural products.

Authors:  Curtis J Henrich; John A Beutler
Journal:  Nat Prod Rep       Date:  2013-08-08       Impact factor: 13.423

Review 10.  Discovery and resupply of pharmacologically active plant-derived natural products: A review.

Authors:  Atanas G Atanasov; Birgit Waltenberger; Eva-Maria Pferschy-Wenzig; Thomas Linder; Christoph Wawrosch; Pavel Uhrin; Veronika Temml; Limei Wang; Stefan Schwaiger; Elke H Heiss; Judith M Rollinger; Daniela Schuster; Johannes M Breuss; Valery Bochkov; Marko D Mihovilovic; Brigitte Kopp; Rudolf Bauer; Verena M Dirsch; Hermann Stuppner
Journal:  Biotechnol Adv       Date:  2015-08-15       Impact factor: 14.227

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