Literature DB >> 25163000

The essential roles of chemistry in high-throughput screening triage.

Jayme L Dahlin1, Michael A Walters.   

Abstract

It is increasingly clear that academic high-throughput screening (HTS) and virtual HTS triage suffers from a lack of scientists trained in the art and science of early drug discovery chemistry. Many recent publications report the discovery of compounds by screening that are most likely artifacts or promiscuous bioactive compounds, and these results are not placed into the context of previous studies. For HTS to be most successful, it is our contention that there must exist an early partnership between biologists and medicinal chemists. Their combined skill sets are necessary to design robust assays and efficient workflows that will weed out assay artifacts, false positives, promiscuous bioactive compounds and intractable screening hits, efforts that ultimately give projects a better chance at identifying truly useful chemical matter. Expertise in medicinal chemistry, cheminformatics and purification sciences (analytical chemistry) can enhance the post-HTS triage process by quickly removing these problematic chemotypes from consideration, while simultaneously prioritizing the more promising chemical matter for follow-up testing. It is only when biologists and chemists collaborate effectively that HTS can manifest its full promise.

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Year:  2014        PMID: 25163000      PMCID: PMC4465542          DOI: 10.4155/fmc.14.60

Source DB:  PubMed          Journal:  Future Med Chem        ISSN: 1756-8919            Impact factor:   3.808


  159 in total

1.  Quantifying the chemical beauty of drugs.

Authors:  G Richard Bickerton; Gaia V Paolini; Jérémy Besnard; Sorel Muresan; Andrew L Hopkins
Journal:  Nat Chem       Date:  2012-01-24       Impact factor: 24.427

2.  Enhancement of chemical rules for predicting compound reactivity towards protein thiol groups.

Authors:  James T Metz; Jeffrey R Huth; Philip J Hajduk
Journal:  J Comput Aided Mol Des       Date:  2007-03-06       Impact factor: 3.686

3.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

4.  GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein.

Authors:  A F Neuwald; D Landsman
Journal:  Trends Biochem Sci       Date:  1997-05       Impact factor: 13.807

Review 5.  Drug discovery for a new generation of covalent drugs.

Authors:  Amit S Kalgutkar; Deepak K Dalvie
Journal:  Expert Opin Drug Discov       Date:  2012-05-19       Impact factor: 6.098

6.  Identification of DNMT1 selective antagonists using a novel scintillation proximity assay.

Authors:  Jessica A Kilgore; Xinlin Du; Lisa Melito; Shuguang Wei; Changguang Wang; Hang Gyeong Chin; Bruce Posner; Sriharsa Pradhan; Joseph M Ready; Noelle S Williams
Journal:  J Biol Chem       Date:  2013-05-13       Impact factor: 5.157

7.  Profiling the NIH Small Molecule Repository for compounds that generate H2O2 by redox cycling in reducing environments.

Authors:  Karina M Soares; Nicole Blackmon; Tong Ying Shun; Sunita N Shinde; Harold K Takyi; Peter Wipf; John S Lazo; Paul A Johnston
Journal:  Assay Drug Dev Technol       Date:  2010-04       Impact factor: 1.738

8.  Redox-based inactivation of cysteine cathepsins by compounds containing the 4-aminophenol moiety.

Authors:  Bojana Mirković; Izidor Sosič; Stanislav Gobec; Janko Kos
Journal:  PLoS One       Date:  2011-11-04       Impact factor: 3.240

9.  Discovery of novel small-molecule inhibitors of BRD4 using structure-based virtual screening.

Authors:  Lewis R Vidler; Panagis Filippakopoulos; Oleg Fedorov; Sarah Picaud; Sarah Martin; Michael Tomsett; Hannah Woodward; Nathan Brown; Stefan Knapp; Swen Hoelder
Journal:  J Med Chem       Date:  2013-10-03       Impact factor: 7.446

10.  Structure-based virtual screening against SARS-3CL(pro) to identify novel non-peptidic hits.

Authors:  Prasenjit Mukherjee; Prashant Desai; Larry Ross; E Lucile White; Mitchell A Avery
Journal:  Bioorg Med Chem       Date:  2008-01-11       Impact factor: 3.641

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  37 in total

Review 1.  Histone-modifying enzymes, histone modifications and histone chaperones in nucleosome assembly: Lessons learned from Rtt109 histone acetyltransferases.

Authors:  Jayme L Dahlin; Xiaoyue Chen; Michael A Walters; Zhiguo Zhang
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-11-03       Impact factor: 8.250

2.  How to Triage PAINS-Full Research.

Authors:  Jayme L Dahlin; Michael A Walters
Journal:  Assay Drug Dev Technol       Date:  2015-10-23       Impact factor: 1.738

3.  Post-HTS case report and structural alert: Promiscuous 4-aroyl-1,5-disubstituted-3-hydroxy-2H-pyrrol-2-one actives verified by ALARM NMR.

Authors:  Jayme L Dahlin; J Willem M Nissink; Subhashree Francis; Jessica M Strasser; Kristen John; Zhiguo Zhang; Michael A Walters
Journal:  Bioorg Med Chem Lett       Date:  2015-08-10       Impact factor: 2.823

Review 4.  Three-dimensional structures in the design of therapeutics targeting parasitic protozoa: reflections on the past, present and future.

Authors:  Wim G J Hol
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-04-16       Impact factor: 1.056

5.  Idea2Data: Toward a New Paradigm for Drug Discovery.

Authors:  Christos A Nicolaou; Christine Humblet; Hong Hu; Eva M Martin; Frank C Dorsey; Thomas M Castle; Keith Ian Burton; Haitao Hu; Jorg Hendle; Michael J Hickey; Joel Duerksen; Jibo Wang; Jon A Erickson
Journal:  ACS Med Chem Lett       Date:  2019-02-04       Impact factor: 4.345

6.  Chemistry: Chemical con artists foil drug discovery.

Authors:  Jonathan Baell; Michael A Walters
Journal:  Nature       Date:  2014-09-25       Impact factor: 49.962

Review 7.  Mitigating risk in academic preclinical drug discovery.

Authors:  Jayme L Dahlin; James Inglese; Michael A Walters
Journal:  Nat Rev Drug Discov       Date:  2015-04       Impact factor: 84.694

Review 8.  Fluorescence anisotropy (polarization): from drug screening to precision medicine.

Authors:  Hairong Zhang; Qian Wu; Mikhail Y Berezin
Journal:  Expert Opin Drug Discov       Date:  2015-08-03       Impact factor: 6.098

9.  Stable Colloidal Drug Aggregates Catch and Release Active Enzymes.

Authors:  Christopher K McLaughlin; Da Duan; Ahil N Ganesh; Hayarpi Torosyan; Brian K Shoichet; Molly S Shoichet
Journal:  ACS Chem Biol       Date:  2016-01-15       Impact factor: 5.100

10.  Establishment of a high-throughput detection system for DNA demethylating agents.

Authors:  Eriko Okochi-Takada; Naoko Hattori; Akihiro Ito; Tohru Niwa; Mika Wakabayashi; Kana Kimura; Minoru Yoshida; Toshikazu Ushijima
Journal:  Epigenetics       Date:  2018-03-05       Impact factor: 4.528

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