Literature DB >> 24622521

Oncogenic protein interfaces: small molecules, big challenges.

Tracy L Nero1, Craig J Morton1, Jessica K Holien1, Jerome Wielens2, Michael W Parker3.   

Abstract

Historically, targeting protein-protein interactions with small molecules was not thought possible because the corresponding interfaces were considered mostly flat and featureless and therefore 'undruggable'. Instead, such interactions were targeted with larger molecules, such as peptides and antibodies. However, the past decade has seen encouraging breakthroughs through the refinement of existing techniques and the development of new ones, together with the identification and exploitation of unexpected aspects of protein-protein interaction surfaces. In this Review, we describe some of the latest techniques to discover modulators of protein-protein interactions and how current drug discovery approaches have been adapted to successfully target these interfaces.

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Year:  2014        PMID: 24622521     DOI: 10.1038/nrc3690

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  156 in total

Review 1.  Small-molecule inhibitors of the p53 suppressor HDM2: have protein-protein interactions come of age as drug targets?

Authors:  Peter M Fischer; David P Lane
Journal:  Trends Pharmacol Sci       Date:  2004-07       Impact factor: 14.819

2.  Peptide-based drug design: here and now.

Authors:  Laszlo Otvos
Journal:  Methods Mol Biol       Date:  2008

Review 3.  Fragment-based ligand discovery.

Authors:  Marcus Fischer; Roderick E Hubbard
Journal:  Mol Interv       Date:  2009-02

4.  S100A10 as a novel biomarker in colorectal cancer.

Authors:  Jinfu Shang; Zhanxue Zhang; Weiqing Song; Baojun Zhou; Yuesheng Zhang; Guixin Li; Shaofan Qiu
Journal:  Tumour Biol       Date:  2013-07-05

5.  Integrated biophysical approach to fragment screening and validation for fragment-based lead discovery.

Authors:  Hernani Leonardo Silvestre; Thomas L Blundell; Chris Abell; Alessio Ciulli
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-19       Impact factor: 11.205

Review 6.  In silico-in vitro screening of protein-protein interactions: towards the next generation of therapeutics.

Authors:  Bruno O Villoutreix; Karine Bastard; Olivier Sperandio; Robin Fahraeus; Jean-Luc Poyet; Fabien Calvo; Benoit Déprez; Maria A Miteva
Journal:  Curr Pharm Biotechnol       Date:  2008-04       Impact factor: 2.837

7.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

8.  Targeting multiple conformations leads to small molecule inhibitors of the uPAR·uPA protein-protein interaction that block cancer cell invasion.

Authors:  May Khanna; Fang Wang; Inha Jo; W Eric Knabe; Sarah M Wilson; Liwei Li; Khuchtumur Bum-Erdene; Jing Li; George W Sledge; Rajesh Khanna; Samy O Meroueh
Journal:  ACS Chem Biol       Date:  2011-09-29       Impact factor: 5.100

9.  A small molecule inhibitor of beta-catenin/CREB-binding protein transcription [corrected].

Authors:  Katayoon H Emami; Cu Nguyen; Hong Ma; Dae Hoon Kim; Kwang Won Jeong; Masakatsu Eguchi; Randall T Moon; Jia-Ling Teo; Se Woong Oh; Hak Yeop Kim; Sung Hwan Moon; Jong Ryul Ha; Michael Kahn
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

10.  BcL-xL conformational changes upon fragment binding revealed by NMR.

Authors:  Clémentine Aguirre; Tim Ten Brink; Olivier Walker; Florence Guillière; Dany Davesne; Isabelle Krimm
Journal:  PLoS One       Date:  2013-05-23       Impact factor: 3.240

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  83 in total

1.  Complexity of Blocking Bivalent Protein-Protein Interactions: Development of a Highly Potent Inhibitor of the Menin-Mixed-Lineage Leukemia Interaction.

Authors:  Dmitry Borkin; Szymon Klossowski; Jonathan Pollock; Hongzhi Miao; Brian M Linhares; Katarzyna Kempinska; Zhuang Jin; Trupta Purohit; Bo Wen; Miao He; Duxin Sun; Tomasz Cierpicki; Jolanta Grembecka
Journal:  J Med Chem       Date:  2018-05-23       Impact factor: 7.446

2.  The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery.

Authors:  Andrei A Ivanov; Brian Revennaugh; Lauren Rusnak; Valentina Gonzalez-Pecchi; Xiulei Mo; Margaret A Johns; Yuhong Du; Lee A D Cooper; Carlos S Moreno; Fadlo R Khuri; Haian Fu
Journal:  Bioinformatics       Date:  2018-04-01       Impact factor: 6.937

3.  Allosteric modulation of a human protein kinase with monobodies.

Authors:  Adelajda Zorba; Vy Nguyen; Akiko Koide; Marc Hoemberger; Yuejiao Zheng; Steffen Kutter; Chansik Kim; Shohei Koide; Dorothee Kern
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-25       Impact factor: 11.205

4.  Structural Basis of the Differential Binding of Engineered Knottins to Integrins αVβ3 and α5β1.

Authors:  Johannes F Van Agthoven; Hengameh Shams; Frank V Cochran; José L Alonso; James R Kintzing; Kiavash Garakani; Brian D Adair; Jian-Ping Xiong; Mohammad R K Mofrad; Jennifer R Cochran; M Amin Arnaout
Journal:  Structure       Date:  2019-07-25       Impact factor: 5.006

Review 5.  Targeting kinase signaling pathways with constrained peptide scaffolds.

Authors:  Laura E Hanold; Melody D Fulton; Eileen J Kennedy
Journal:  Pharmacol Ther       Date:  2017-02-07       Impact factor: 12.310

Review 6.  Structure-based inhibition of protein-protein interactions.

Authors:  Andrew M Watkins; Paramjit S Arora
Journal:  Eur J Med Chem       Date:  2014-09-16       Impact factor: 6.514

7.  The non-enzymatic RAS effector RASSF7 inhibits oncogenic c-Myc function.

Authors:  Anbarasu Kumaraswamy; Anitha Mamidi; Pavitra Desai; Ananthi Sivagnanam; Lakshmi Revathi Perumalsamy; Chandrasekaran Ramakrishnan; Michael Gromiha; Krishnaraj Rajalingam; Sundarasamy Mahalingam
Journal:  J Biol Chem       Date:  2018-08-23       Impact factor: 5.157

8.  Structure-Based Identification of Novel Ligands Targeting Multiple Sites within a Chemokine-G-Protein-Coupled-Receptor Interface.

Authors:  Emmanuel W Smith; Amanda M Nevins; Zhen Qiao; Yan Liu; Anthony E Getschman; Sai L Vankayala; M Trent Kemp; Francis C Peterson; Rongshi Li; Brian F Volkman; Yu Chen
Journal:  J Med Chem       Date:  2016-04-14       Impact factor: 7.446

Review 9.  Inhibitors of protein-protein interactions (PPIs): an analysis of scaffold choices and buried surface area.

Authors:  Xu Ran; Jason E Gestwicki
Journal:  Curr Opin Chem Biol       Date:  2018-06-13       Impact factor: 8.822

Review 10.  A structural view of PA2G4 isoforms with opposing functions in cancer.

Authors:  Brendan W Stevenson; Michael A Gorman; Jessica Koach; Belamy B Cheung; Glenn M Marshall; Michael W Parker; Jessica K Holien
Journal:  J Biol Chem       Date:  2020-09-20       Impact factor: 5.157

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