Literature DB >> 24861567

Intracellular light-activation of riboswitch activity.

Steven Walsh1, Laura Gardner, Alexander Deiters, Gavin J Williams.   

Abstract

By combining a riboswitch with a cell-permeable photocaged small-molecule ligand, an optochemical gene control element was constructed that enabled spatial and temporal control of gene expression in bacterial cells. The simplicity of this strategy, coupled with the ability to create synthetic riboswitches with tailored ligand specificities and output in a variety of microorganisms, plants, and fungi might afford a general strategy to photocontrol gene expression in vivo. The ability to activate riboswitches by using light enables the interrogation and manipulation of a wide range of biological processes with high precision, and will have broad utility in the regulation of artificial genetic circuits.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA; chemical biology; photocontrol; riboswitches; synthetic biology

Mesh:

Substances:

Year:  2014        PMID: 24861567      PMCID: PMC4095863          DOI: 10.1002/cbic.201400024

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  31 in total

1.  Inducible gene expression from the plastid genome by a synthetic riboswitch.

Authors:  Andreas Verhounig; Daniel Karcher; Ralph Bock
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

Review 2.  Riboswitches and the RNA world.

Authors:  Ronald R Breaker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-02-01       Impact factor: 10.005

3.  Synthetic riboswitches that induce gene expression in diverse bacterial species.

Authors:  Shana Topp; Colleen M K Reynoso; Jessica C Seeliger; Ian S Goldlust; Shawn K Desai; Dorothée Murat; Aimee Shen; Aaron W Puri; Arash Komeili; Carolyn R Bertozzi; June R Scott; Justin P Gallivan
Journal:  Appl Environ Microbiol       Date:  2010-10-08       Impact factor: 4.792

4.  Reengineering orthogonally selective riboswitches.

Authors:  Neil Dixon; John N Duncan; Torsten Geerlings; Mark S Dunstan; John E G McCarthy; David Leys; Jason Micklefield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

Review 5.  Light-controlled tools.

Authors:  Clara Brieke; Falk Rohrbach; Alexander Gottschalk; Günter Mayer; Alexander Heckel
Journal:  Angew Chem Int Ed Engl       Date:  2012-07-24       Impact factor: 15.336

6.  Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor.

Authors:  Martin M Rudolph; Michael-Paul Vockenhuber; Beatrix Suess
Journal:  Microbiology (Reading)       Date:  2013-05-15       Impact factor: 2.777

Review 7.  Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators.

Authors:  Alexander Wittmann; Beatrix Suess
Journal:  FEBS Lett       Date:  2012-02-28       Impact factor: 4.124

8.  Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.

Authors:  Andreas Wachter; Meral Tunc-Ozdemir; Beth C Grove; Pamela J Green; David K Shintani; Ronald R Breaker
Journal:  Plant Cell       Date:  2007-11-09       Impact factor: 11.277

Review 9.  The structural and functional diversity of metabolite-binding riboswitches.

Authors:  Adam Roth; Ronald R Breaker
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  Control of gene expression by a natural metabolite-responsive ribozyme.

Authors:  Wade C Winkler; Ali Nahvi; Adam Roth; Jennifer A Collins; Ronald R Breaker
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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  7 in total

1.  Photocaged DNAzymes as a general method for sensing metal ions in living cells.

Authors:  Kevin Hwang; Peiwen Wu; Taejin Kim; Lei Lei; Shiliang Tian; Yingxiao Wang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-14       Impact factor: 15.336

Review 2.  Translational control of gene function through optically regulated nucleic acids.

Authors:  Kristie E Darrah; Alexander Deiters
Journal:  Chem Soc Rev       Date:  2021-11-29       Impact factor: 54.564

3.  Light Control of Protein Solubility Through Isoelectric Point Modulation.

Authors:  Karthik Nadendla; Simon H Friedman
Journal:  J Am Chem Soc       Date:  2017-12-01       Impact factor: 15.419

4.  An open-hardware platform for optogenetics and photobiology.

Authors:  Karl P Gerhardt; Evan J Olson; Sebastian M Castillo-Hair; Lucas A Hartsough; Brian P Landry; Felix Ekness; Rayka Yokoo; Eric J Gomez; Prabha Ramakrishnan; Junghae Suh; David F Savage; Jeffrey J Tabor
Journal:  Sci Rep       Date:  2016-11-02       Impact factor: 4.379

5.  Regulation of mRNA translation by a photoriboswitch.

Authors:  Kelly A Rotstan; Michael M Abdelsayed; Luiz Fm Passalacqua; Fabio Chizzolini; Kasireddy Sudarshan; A Richard Chamberlin; Jiří Míšek; Andrej Luptak
Journal:  Elife       Date:  2020-02-13       Impact factor: 8.140

6.  Nitrodibenzofuran: A One- and Two-Photon Sensitive Protecting Group That Is Superior to Brominated Hydroxycoumarin for Thiol Caging in Peptides.

Authors:  M Mohsen Mahmoodi; Daniel Abate-Pella; Tom J Pundsack; Charuta C Palsuledesai; Philip C Goff; David A Blank; Mark D Distefano
Journal:  J Am Chem Soc       Date:  2016-05-02       Impact factor: 15.419

Review 7.  Controlling gene expression with light: a multidisciplinary endeavour.

Authors:  Denis Hartmann; Jefferson M Smith; Giacomo Mazzotti; Razia Chowdhry; Michael J Booth
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

  7 in total

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