Literature DB >> 34739027

Translational control of gene function through optically regulated nucleic acids.

Kristie E Darrah1, Alexander Deiters1.   

Abstract

Translation of mRNA into protein is one of the most fundamental processes within biological systems. Gene expression is tightly regulated both in space and time, often involving complex signaling or gene regulatory networks, as most prominently observed in embryo development. Thus, studies of gene function require tools with a matching level of external control. Light is an excellent conditional trigger as it is minimally invasive, can be easily tuned in wavelength and amplitude, and can be applied with excellent spatial and temporal resolution. To this end, modification of established oligonucleotide-based technologies with optical control elements, in the form of photocaging groups and photoswitches, has rendered these tools capable of navigating the dynamic regulatory pathways of mRNA translation in cellular and in vivo models. In this review, we discuss the different optochemical approaches used to generate photoresponsive nucleic acids that activate and deactivate gene expression and function at the translational level.

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Year:  2021        PMID: 34739027      PMCID: PMC8900068          DOI: 10.1039/d1cs00257k

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  139 in total

1.  Light-activated RNA interference.

Authors:  Samit Shah; Subhashree Rangarajan; Simon H Friedman
Journal:  Angew Chem Int Ed Engl       Date:  2005-02-18       Impact factor: 15.336

2.  Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.

Authors:  M Koizumi; G A Soukup; J N Kerr; R R Breaker
Journal:  Nat Struct Biol       Date:  1999-11

Review 3.  Recent developments in reversible photoregulation of oligonucleotide structure and function.

Authors:  Anouk S Lubbe; Wiktor Szymanski; Ben L Feringa
Journal:  Chem Soc Rev       Date:  2017-02-20       Impact factor: 54.564

4.  Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides.

Authors:  XinJing Tang; Meng Su; LiLi Yu; Cong Lv; Jie Wang; ZhongJin Li
Journal:  Nucleic Acids Res       Date:  2010-02-17       Impact factor: 16.971

5.  Light-activation of gene function in mammalian cells via ribozymes.

Authors:  Douglas D Young; R Aaron Garner; Jeffrey A Yoder; Alexander Deiters
Journal:  Chem Commun (Camb)       Date:  2008-12-02       Impact factor: 6.222

6.  Cellular delivery and photochemical activation of antisense agents through a nucleobase caging strategy.

Authors:  Jeane M Govan; Rajendra Uprety; Meryl Thomas; Hrvoje Lusic; Mark O Lively; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2013-08-19       Impact factor: 5.100

Review 7.  Antisense oligonucleotides: the next frontier for treatment of neurological disorders.

Authors:  Carlo Rinaldi; Matthew J A Wood
Journal:  Nat Rev Neurol       Date:  2017-12-01       Impact factor: 42.937

8.  Optochemical control of RNA interference in mammalian cells.

Authors:  Jeane M Govan; Douglas D Young; Hrvoje Lusic; Qingyang Liu; Mark O Lively; Alexander Deiters
Journal:  Nucleic Acids Res       Date:  2013-09-10       Impact factor: 16.971

9.  Practical Synthesis of Quinoline-Protected Morpholino Oligomers for Light-Triggered Regulation of Gene Function.

Authors:  Davide Deodato; Timothy M Dore
Journal:  Molecules       Date:  2020-04-29       Impact factor: 4.411

10.  Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides.

Authors:  XinJing Tang; Jyothishmathi Swaminathan; Alan M Gewirtz; Ivan J Dmochowski
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

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  1 in total

Review 1.  The Development and Application of Opto-Chemical Tools in the Zebrafish.

Authors:  Zhiping Feng; Bertrand Ducos; Pierluigi Scerbo; Isabelle Aujard; Ludovic Jullien; David Bensimon
Journal:  Molecules       Date:  2022-09-22       Impact factor: 4.927

  1 in total

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