Literature DB >> 15029187

Control of gene expression by a natural metabolite-responsive ribozyme.

Wade C Winkler1, Ali Nahvi, Adam Roth, Jennifer A Collins, Ronald R Breaker.   

Abstract

Most biological catalysts are made of protein; however, eight classes of natural ribozymes have been discovered that catalyse fundamental biochemical reactions. The central functions of ribozymes in modern organisms support the hypothesis that life passed through an 'RNA world' before the emergence of proteins and DNA. We have identified a new class of ribozymes that cleaves the messenger RNA of the glmS gene in Gram-positive bacteria. The ribozyme is activated by glucosamine-6-phosphate (GlcN6P), which is the metabolic product of the GlmS enzyme. Additional data indicate that the ribozyme serves as a metabolite-responsive genetic switch that represses the glmS gene in response to rising GlcN6P concentrations. These findings demonstrate that ribozyme switches may have functioned as metabolite sensors in primitive organisms, and further suggest that modern cells retain some of these ancient genetic control systems.

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Year:  2004        PMID: 15029187     DOI: 10.1038/nature02362

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  303 in total

1.  Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.

Authors:  Pavel Banás; Nils G Walter; Jirí Sponer; Michal Otyepka
Journal:  J Phys Chem B       Date:  2010-07-08       Impact factor: 2.991

2.  An active-site guanine participates in glmS ribozyme catalysis in its protonated state.

Authors:  Júlia Viladoms; Lincoln G Scott; Martha J Fedor
Journal:  J Am Chem Soc       Date:  2011-10-20       Impact factor: 15.419

3.  Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

4.  New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.

Authors:  Jeffrey E Barrick; Keith A Corbino; Wade C Winkler; Ali Nahvi; Maumita Mandal; Jennifer Collins; Mark Lee; Adam Roth; Narasimhan Sudarsan; Inbal Jona; J Kenneth Wickiser; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

Review 5.  The ubiquitous hammerhead ribozyme.

Authors:  Christian Hammann; Andrej Luptak; Jonathan Perreault; Marcos de la Peña
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

6.  Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes.

Authors:  Dana J Ruminski; Chiu-Ho T Webb; Nathan J Riccitelli; Andrej Lupták
Journal:  J Biol Chem       Date:  2011-10-12       Impact factor: 5.157

7.  Alarmones as Vestiges of a Bygone RNA World.

Authors:  Ricardo Hernández-Morales; Arturo Becerra; Antonio Lazcano
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

Review 8.  Themes and variations in riboswitch structure and function.

Authors:  Alla Peselis; Alexander Serganov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 9.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

10.  Characterization of YvcJ, a conserved P-loop-containing protein, and its implication in competence in Bacillus subtilis.

Authors:  Jennifer Luciano; Elodie Foulquier; Jean-Raphael Fantino; Anne Galinier; Frédérique Pompeo
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

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