Literature DB >> 19298181

The structural and functional diversity of metabolite-binding riboswitches.

Adam Roth1, Ronald R Breaker.   

Abstract

The cellular concentrations of certain metabolites are assiduously monitored to achieve appropriate levels of gene expression. Although proteins have long been known to act as sensors in this capacity, metabolite-binding RNAs, or riboswitches, also play an important role. More than 20 distinct classes of riboswitches have been identified to date, and insights to the molecular recognition strategies of a significant subset of these have been provided by detailed structural studies. This diverse set of metabolite-sensing RNAs is found to exploit a variety of distinct mechanisms to regulate genes that are fundamental to metabolism.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19298181      PMCID: PMC5325118          DOI: 10.1146/annurev.biochem.78.070507.135656

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  125 in total

1.  Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site.

Authors:  Feng Guo; Anne R Gooding; Thomas R Cech
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

2.  An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs.

Authors:  Jonas Noeske; Christian Richter; Marc A Grundl; Hamid R Nasiri; Harald Schwalbe; Jens Wöhnert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-21       Impact factor: 11.205

3.  Characteristics of ligand recognition by a glmS self-cleaving ribozyme.

Authors:  Jinsoo Lim; Beth C Grove; Adam Roth; Ronald R Breaker
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-13       Impact factor: 15.336

4.  S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA.

Authors:  Ryan T Fuchs; Frank J Grundy; Tina M Henkin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-09       Impact factor: 11.205

5.  Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.

Authors:  Changrui Lu; Angela M Smith; Ryan T Fuchs; Fang Ding; Kanagalaghatta Rajashankar; Tina M Henkin; Ailong Ke
Journal:  Nat Struct Mol Biol       Date:  2008-09-21       Impact factor: 15.369

6.  Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Authors:  Wade Winkler; Ali Nahvi; Ronald R Breaker
Journal:  Nature       Date:  2002-10-16       Impact factor: 49.962

7.  The riboswitch-mediated control of sulfur metabolism in bacteria.

Authors:  Vitaly Epshtein; Alexander S Mironov; Evgeny Nudler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

8.  Ribozyme inhibitors: deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor.

Authors:  B L Bass; T R Cech
Journal:  Biochemistry       Date:  1986-08-12       Impact factor: 3.162

9.  The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase.

Authors:  Ryan T Fuchs; Frank J Grundy; Tina M Henkin
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

10.  Riboswitches in eubacteria sense the second messenger cyclic di-GMP.

Authors:  N Sudarsan; E R Lee; Z Weinberg; R H Moy; J N Kim; K H Link; R R Breaker
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

View more
  244 in total

1.  Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.

Authors:  Griffin M Schroeder; Debapratim Dutta; Chapin E Cavender; Jermaine L Jenkins; Elizabeth M Pritchett; Cameron D Baker; John M Ashton; David H Mathews; Joseph E Wedekind
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

2.  Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.

Authors:  Kathryn D Smith; Sarah V Lipchock; Scott A Strobel
Journal:  Biochemistry       Date:  2011-12-27       Impact factor: 3.162

3.  Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.

Authors:  Kathryn D Smith; Carly A Shanahan; Emily L Moore; Aline C Simon; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

4.  An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches.

Authors:  Eileen M Sherman; Jackie Esquiaqui; Galal Elsayed; Jing-Dong Ye
Journal:  RNA       Date:  2012-01-25       Impact factor: 4.942

Review 5.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

Review 6.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

7.  Riboswitch control of Rho-dependent transcription termination.

Authors:  Kerry Hollands; Sergey Proshkin; Svetlana Sklyarova; Vitaly Epshtein; Alexander Mironov; Evgeny Nudler; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

8.  Mechanism for gene control by a natural allosteric group I ribozyme.

Authors:  Andy G Y Chen; Narasimhan Sudarsan; Ronald R Breaker
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

9.  RNA structure: Riboswitch strikes a chord.

Authors:  Charles E Dann
Journal:  Nat Chem Biol       Date:  2011-09-19       Impact factor: 15.040

Review 10.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.