Literature DB >> 24749882

National Cancer Institute Biospecimen Evidence-Based Practices: a novel approach to pre-analytical standardization.

Kelly B Engel1, Jim Vaught, Helen M Moore.   

Abstract

Variable biospecimen collection, processing, and storage practices may introduce variability in biospecimen quality and analytical results. This risk can be minimized within a facility through the use of standardized procedures; however, analysis of biospecimens from different facilities may be confounded by differences in procedures and inferred biospecimen quality. Thus, a global approach to standardization of biospecimen handling procedures and their validation is needed. Here we present the first in a series of procedural guidelines that were developed and annotated with published findings in the field of human biospecimen science. The series of documents will be known as NCI Biospecimen Evidence-Based Practices, or BEBPs. Pertinent literature was identified via the National Cancer Institute (NCI) Biospecimen Research Database ( brd.nci.nih.gov ) and findings were organized by specific biospecimen pre-analytical factors and analytes of interest (DNA, RNA, protein, morphology). Meta-analysis results were presented as annotated summaries, which highlight concordant and discordant findings and the threshold and magnitude of effects when applicable. The detailed and adaptable format of the document is intended to support the development and execution of evidence-based standard operating procedures (SOPs) for human biospecimen collection, processing, and storage operations.

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Year:  2014        PMID: 24749882      PMCID: PMC3995433          DOI: 10.1089/bio.2013.0091

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  11 in total

1.  Cerebrospinal fluid collection tubes: a critical issue for Alzheimer disease diagnosis.

Authors:  Armand Perret-Liaudet; Mathieu Pelpel; Yannick Tholance; Benoit Dumont; Hugo Vanderstichele; Willy Zorzi; Benaissa ElMoualij; Susanna Schraen; Olivier Moreaud; Audrey Gabelle; Eric Thouvenot; Catherine Thomas-Anterion; Jacques Touchon; Pierre Krolak-Salmon; Gabor G Kovacs; Arnaud Coudreuse; Isabelle Quadrio; Sylvain Lehmann
Journal:  Clin Chem       Date:  2012-02-08       Impact factor: 8.327

Review 2.  Effects of preanalytical variables on the detection of proteins by immunohistochemistry in formalin-fixed, paraffin-embedded tissue.

Authors:  Kelly B Engel; Helen M Moore
Journal:  Arch Pathol Lab Med       Date:  2011-05       Impact factor: 5.534

Review 3.  Identification of evidence-based biospecimen quality-control tools: a report of the International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group.

Authors:  Fotini Betsou; Elaine Gunter; Judith Clements; Yvonne DeSouza; Katrina A B Goddard; Fiorella Guadagni; Wusheng Yan; Amy Skubitz; Stella Somiari; Trina Yeadon; Rodrigo Chuaqui
Journal:  J Mol Diagn       Date:  2012-11-27       Impact factor: 5.568

4.  2012 best practices for repositories collection, storage, retrieval, and distribution of biological materials for research international society for biological and environmental repositories.

Authors: 
Journal:  Biopreserv Biobank       Date:  2012-04       Impact factor: 2.300

5.  Variable specimen handling affects hormone receptor test results in women with breast cancer: a large multihospital retrospective study.

Authors:  Flory L Nkoy; M Elizabeth H Hammond; William Rees; Tom Belnap; Braden Rowley; Steve Catmull; William Sause
Journal:  Arch Pathol Lab Med       Date:  2010-04       Impact factor: 5.534

6.  Analysis of the molecular quality of human tissues: an experience from the Cooperative Human Tissue Network.

Authors:  Scott D Jewell; Mythily Srinivasan; Linda M McCart; Nita Williams; William H Grizzle; Virginia LiVolsi; Greg MacLennan; Daniel D Sedmak
Journal:  Am J Clin Pathol       Date:  2002-11       Impact factor: 2.493

Review 7.  A review of preanalytical factors affecting molecular, protein, and morphological analysis of formalin-fixed, paraffin-embedded (FFPE) tissue: how well do you know your FFPE specimen?

Authors:  B Paige Bass; Kelly B Engel; Sarah R Greytak; Helen M Moore
Journal:  Arch Pathol Lab Med       Date:  2014-11       Impact factor: 5.534

8.  Risk of Alzheimer's disease biological misdiagnosis linked to cerebrospinal collection tubes.

Authors:  Armand Perret-Liaudet; Mathieu Pelpel; Yannick Tholance; Benoit Dumont; Hugo Vanderstichele; Willy Zorzi; Benaissa Elmoualij; Susanna Schraen; Olivier Moreaud; Audrey Gabelle; Eric Thouvenot; Catherine Thomas-Anterion; Jacques Touchon; Pierre Krolak-Salmon; Gabor G Kovacs; Arnaud Coudreuse; Isabelle Quadrio; Sylvain Lehmann
Journal:  J Alzheimers Dis       Date:  2012       Impact factor: 4.472

9.  Biobanking of human pancreas cancer tissue: impact of ex-vivo procurement times on RNA quality.

Authors:  Udo Rudloff; Umesh Bhanot; William Gerald; David S Klimstra; William R Jarnagin; Murray F Brennan; Peter J Allen
Journal:  Ann Surg Oncol       Date:  2010-02-17       Impact factor: 5.344

10.  The Genotype-Tissue Expression (GTEx) project.

Authors: 
Journal:  Nat Genet       Date:  2013-06       Impact factor: 38.330

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  13 in total

Review 1.  Accuracy of Molecular Data Generated with FFPE Biospecimens: Lessons from the Literature.

Authors:  Sarah R Greytak; Kelly B Engel; B Paige Bass; Helen M Moore
Journal:  Cancer Res       Date:  2015-04-02       Impact factor: 12.701

2.  National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue.

Authors:  Sarah R Greytak; Kelly B Engel; Erik Zmuda; Esmeralda Casas-Silva; Ping Guan; Katherine A Hoadley; Andrew J Mungall; David A Wheeler; Harsha V Doddapaneni; Helen M Moore
Journal:  Biopreserv Biobank       Date:  2018-06-19       Impact factor: 2.300

3.  Moving toward biospecimen harmonization with evidence-based practices.

Authors:  Helen M Moore
Journal:  Biopreserv Biobank       Date:  2014-04       Impact factor: 2.300

Review 4.  Understanding preanalytical variables and their effects on clinical biomarkers of oncology and immunotherapy.

Authors:  Lokesh Agrawal; Kelly B Engel; Sarah R Greytak; Helen M Moore
Journal:  Semin Cancer Biol       Date:  2017-12-16       Impact factor: 15.707

5.  Biorepository best practices for research and clinical investigations.

Authors:  Micheline Sanderson-November; Sylvia Silver; Vanessa Hooker; Monika Schmelz
Journal:  Contemp Clin Trials       Date:  2021-09-25       Impact factor: 2.261

6.  A multidisciplinary approach to optimize primary prostate cancer biobanking.

Authors:  Peter Y Cai; Muhammad Asad; Michael A Augello; Laura Martin; Christopher Louie; Spyridon P Basourakos; Christopher D Gaffney; Jonathan Shoag; Jiangling Jenny Tu; Francesca Khani; Juan Miguel Mosquera; Massimo Loda; Douglas S Scherr; Christopher E Barbieri; Brian D Robinson
Journal:  Urol Oncol       Date:  2022-04-28       Impact factor: 2.954

7.  Evaluating the effects of preanalytical variables on the stability of the human plasma proteome.

Authors:  Maria E Hassis; Richard K Niles; Miles N Braten; Matthew E Albertolle; H Ewa Witkowska; Carl A Hubel; Susan J Fisher; Katherine E Williams
Journal:  Anal Biochem       Date:  2015-03-10       Impact factor: 3.365

Review 8.  Translational research in oncology--10 years of progress and future prospects.

Authors:  James H Doroshow; Shivaani Kummar
Journal:  Nat Rev Clin Oncol       Date:  2014-10-07       Impact factor: 66.675

Review 9.  Harnessing non-destructive 3D pathology.

Authors:  Jonathan T C Liu; Adam K Glaser; Kaustav Bera; Lawrence D True; Nicholas P Reder; Kevin W Eliceiri; Anant Madabhushi
Journal:  Nat Biomed Eng       Date:  2021-02-15       Impact factor: 25.671

10.  Impact of Specimen Heterogeneity on Biomarkers in Repository Samples from Patients with Acute Myeloid Leukemia: A SWOG Report.

Authors:  Era L Pogosova-Agadjanyan; Anna Moseley; Megan Othus; Frederick R Appelbaum; Thomas R Chauncey; I-Ming L Chen; Harry P Erba; John E Godwin; Min Fang; Kenneth J Kopecky; Alan F List; Galina L Pogosov; Jerald P Radich; Cheryl L Willman; Brent L Wood; Soheil Meshinchi; Derek L Stirewalt
Journal:  Biopreserv Biobank       Date:  2017-11-27       Impact factor: 2.256

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