Literature DB >> 29920119

National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue.

Sarah R Greytak1, Kelly B Engel2, Erik Zmuda3, Esmeralda Casas-Silva4, Ping Guan4, Katherine A Hoadley5, Andrew J Mungall6, David A Wheeler7, Harsha V Doddapaneni7, Helen M Moore4.   

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Year:  2018        PMID： 29920119      PMCID： PMC6080192          DOI： 10.1089/bio.2018.0046

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN： 1947-5543            Impact factor:   2.300


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  29 in total

Review 1.  Accuracy of Molecular Data Generated with FFPE Biospecimens: Lessons from the Literature.

Authors:  Sarah R Greytak; Kelly B Engel; B Paige Bass; Helen M Moore
Journal:  Cancer Res       Date:  2015-04-02       Impact factor: 12.701

2.  Bring on the biomarkers.

Authors:  George Poste
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

3.  Nucleic acid quantity and quality from paraffin blocks: defining optimal fixation, processing and DNA/RNA extraction techniques.

Authors:  Gulisa Turashvili; Winnie Yang; Steven McKinney; Steve Kalloger; Nadia Gale; Ying Ng; Katie Chow; Lynda Bell; Julie Lorette; Melinda Carrier; Margaret Luk; Samuel Aparicio; David Huntsman; Stephen Yip
Journal:  Exp Mol Pathol       Date:  2011-09-21       Impact factor: 3.362

4.  Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling.

Authors:  Lisa Roberts; Jessica Bowers; Kelly Sensinger; Andrew Lisowski; Robert Getts; Mark G Anderson
Journal:  Genomics       Date:  2009-08-04       Impact factor: 5.736

Review 5.  A review of preanalytical factors affecting molecular, protein, and morphological analysis of formalin-fixed, paraffin-embedded (FFPE) tissue: how well do you know your FFPE specimen?

Authors:  B Paige Bass; Kelly B Engel; Sarah R Greytak; Helen M Moore
Journal:  Arch Pathol Lab Med       Date:  2014-11       Impact factor: 5.534

6.  Formaldehyde cross-linking for studying nucleosomal dynamics.

Authors:  V Jackson
Journal:  Methods       Date:  1999-02       Impact factor: 3.608

7.  RNA expression analysis of formalin-fixed paraffin-embedded tumors.

Authors:  Shannon K Penland; Temitope O Keku; Chad Torrice; Xiaping He; Janakiraman Krishnamurthy; Katherine A Hoadley; John T Woosley; Nancy E Thomas; Charles M Perou; Robert S Sandler; Norman E Sharpless
Journal:  Lab Invest       Date:  2007-02-12       Impact factor: 5.662

8.  Modifications of human and viral deoxyribonucleic acid by formaldehyde fixation.

Authors:  F Karlsen; M Kalantari; M Chitemerere; B Johansson; B Hagmar
Journal:  Lab Invest       Date:  1994-10       Impact factor: 5.662

9.  PCR amplification of DNA from archival specimens. A methodological approach.

Authors:  J Pavelić; K Gall-Troselj; M H Bosnar; M M Kardum; K Pavelić
Journal:  Neoplasma       Date:  1996       Impact factor: 2.575

10.  Functional DNA quantification guides accurate next-generation sequencing mutation detection in formalin-fixed, paraffin-embedded tumor biopsies.

Authors:  Sachin Sah; Liangjing Chen; Jeffrey Houghton; Jon Kemppainen; Adam C Marko; Robert Zeigler; Gary J Latham
Journal:  Genome Med       Date:  2013-08-30       Impact factor: 11.117
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  2 in total

Review 1.  Currently Applied Molecular Assays for Identifying ESR1 Mutations in Patients with Advanced Breast Cancer.

Authors:  Nuri Lee; Min-Jeong Park; Wonkeun Song; Kibum Jeon; Seri Jeong
Journal:  Int J Mol Sci       Date:  2020-11-20       Impact factor: 5.923

2.  Molecular Features of Cancers Exhibiting Exceptional Responses to Treatment.

Authors:  David A Wheeler; Naoko Takebe; Toshinori Hinoue; Katherine A Hoadley; Maria F Cardenas; Alina M Hamilton; Peter W Laird; Linghua Wang; Adrienne Johnson; Ninad Dewal; Vincent Miller; David Piñeyro; Manuel Castro de Moura; Manel Esteller; Hui Shen; Jean Claude Zenklusen; Roy Tarnuzzer; Lisa M McShane; James V Tricoli; Paul M Williams; Irina Lubensky; Geraldine O'Sullivan-Coyne; Elise C Kohn; Richard F Little; Jeffrey White; Shakun Malik; Lyndsay Harris; Carol Weil; Alice P Chen; Chris Karlovich; Brian Rodgers; Lalitha Shankar; Paula Jacobs; Tracy Nolan; Jianhong Hu; Donna M Muzny; Harshavardhan Doddapaneni; Viktoriya Korchina; Julie Gastier-Foster; Jay Bowen; Kristen Leraas; Elijah F Edmondson; James H Doroshow; Barbara A Conley; S Percy Ivy; Louis M Staudt
Journal:  Cancer Cell       Date:  2020-11-19       Impact factor: 31.743
  2 in total

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