Literature DB >> 23195791

Identification of evidence-based biospecimen quality-control tools: a report of the International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group.

Fotini Betsou1, Elaine Gunter, Judith Clements, Yvonne DeSouza, Katrina A B Goddard, Fiorella Guadagni, Wusheng Yan, Amy Skubitz, Stella Somiari, Trina Yeadon, Rodrigo Chuaqui.   

Abstract

Control of biospecimen quality that is linked to processing is one of the goals of biospecimen science. Consensus is lacking, however, regarding optimal sample quality-control (QC) tools (ie, markers and assays). The aim of this review was to identify QC tools, both for fluid and solid-tissue samples, based on a comprehensive and critical literature review. The most readily applicable tools are those with a known threshold for the preanalytical variation and a known reference range for the QC analyte. Only a few meaningful markers were identified that meet these criteria, such as CD40L for assessing serum exposure at high temperatures and VEGF for assessing serum freeze-thawing. To fully assess biospecimen quality, multiple QC markers are needed. Here we present the most promising biospecimen QC tools that were identified.
Copyright © 2013 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23195791      PMCID: PMC5707193          DOI: 10.1016/j.jmoldx.2012.06.008

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  59 in total

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Authors:  R E Banks
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2.  Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel.

Authors:  David L Barker; Mark S T Hansen; A Fawad Faruqi; Diane Giannola; Orlando R Irsula; Roger S Lasken; Martin Latterich; Vladimir Makarov; Arnold Oliphant; Jonathon H Pinter; Richard Shen; Irina Sleptsova; William Ziehler; Eric Lai
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

3.  The effects of anticoagulation and processing on assays of IL-6, sIL-6R, sIL-2R and soluble transferrin receptor.

Authors:  R De Jongh; J Vranken; G Vundelinckx; E Bosmans; M Maes; R Heylen
Journal:  Cytokine       Date:  1997-09       Impact factor: 3.861

4.  Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources.

Authors:  Andrew W Bergen; Kashif A Haque; Ying Qi; Michael B Beerman; Montserrat Garcia-Closas; Nathaniel Rothman; Stephen J Chanock
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5.  Effects of storage time and exogenous protease inhibitors on plasma protein levels.

Authors:  Saleh Ayache; Monica Panelli; Francesco M Marincola; David F Stroncek
Journal:  Am J Clin Pathol       Date:  2006-08       Impact factor: 2.493

6.  Influence of pre-analytical variables on VEGF gene expression and circulating protein concentrations.

Authors:  Mohsen Azimi-Nezhad; Daniel Lambert; Catherine Ottone; Corinne Perrin; Celine Chapel; Gwenaëlle Gaillard; Michèle Pfister; Christine Masson; Eric Tabone; Fay Betsou; David Meyronet; Marie-Noëlle Ungeheuer; Sophie Visvikis Siest
Journal:  Biopreserv Biobank       Date:  2012-10       Impact factor: 2.300

7.  Plasma ascorbic acid: measurement, stability and clinical utility revisited.

Authors:  W Y Chung; J K Chung; Y T Szeto; B Tomlinson; I F Benzie
Journal:  Clin Biochem       Date:  2001-11       Impact factor: 3.281

8.  2009 Biospecimen research network symposium: advancing cancer research through biospecimen science.

Authors:  Helen M Moore; Carolyn C Compton; Mark D Lim; Jimmie Vaught; Katerina N Christiansen; Joe Alper
Journal:  Cancer Res       Date:  2009-08-25       Impact factor: 12.701

9.  Stability of RNA isolated from post-mortem tissues of Atlantic salmon (Salmo salar L.).

Authors:  P J Seear; G E Sweeney
Journal:  Fish Physiol Biochem       Date:  2007-06-12       Impact factor: 2.794

10.  Prerequisites for cytokine measurements in clinical trials with multiplex immunoassays.

Authors:  Wilco de Jager; Katarzyna Bourcier; Ger T Rijkers; Berent J Prakken; Vicki Seyfert-Margolis
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  17 in total

1.  Ex vivo instability of glycated albumin: A role for autoxidative glycation.

Authors:  Joshua W Jeffs; Shadi Ferdosi; Hussein N Yassine; Chad R Borges
Journal:  Arch Biochem Biophys       Date:  2017-07-13       Impact factor: 4.013

2.  National Cancer Institute Biospecimen Evidence-Based Practices: a novel approach to pre-analytical standardization.

Authors:  Kelly B Engel; Jim Vaught; Helen M Moore
Journal:  Biopreserv Biobank       Date:  2014-04       Impact factor: 2.300

Review 3.  Enhancing translational research in paediatric rheumatology through standardization.

Authors:  Rae S M Yeung; Salvatore Albani; Brian M Feldman; Elizabeth Mellins; Berent Prakken; Lucy R Wedderburn
Journal:  Nat Rev Rheumatol       Date:  2016-09-22       Impact factor: 20.543

Review 4.  Understanding preanalytical variables and their effects on clinical biomarkers of oncology and immunotherapy.

Authors:  Lokesh Agrawal; Kelly B Engel; Sarah R Greytak; Helen M Moore
Journal:  Semin Cancer Biol       Date:  2017-12-16       Impact factor: 15.707

Review 5.  Biobanks and personalized medicine.

Authors:  J E Olson; S J Bielinski; E Ryu; E M Winkler; P Y Takahashi; J Pathak; J R Cerhan
Journal:  Clin Genet       Date:  2014-03-27       Impact factor: 4.438

6.  Evaluating the effects of preanalytical variables on the stability of the human plasma proteome.

Authors:  Maria E Hassis; Richard K Niles; Miles N Braten; Matthew E Albertolle; H Ewa Witkowska; Carl A Hubel; Susan J Fisher; Katherine E Williams
Journal:  Anal Biochem       Date:  2015-03-10       Impact factor: 3.365

7.  The Effects of Long-term Storage on Commonly Measured Serum Analyte Levels.

Authors:  Cynthia Kleeberger; David Shore; Elaine Gunter; Dale P Sandler; Clarice R Weinberg
Journal:  Epidemiology       Date:  2018-05       Impact factor: 4.822

8.  Elevated plasma albumin and apolipoprotein A-I oxidation under suboptimal specimen storage conditions.

Authors:  Chad R Borges; Douglas S Rehder; Sally Jensen; Matthew R Schaab; Nisha D Sherma; Hussein Yassine; Boriana Nikolova; Christian Breburda
Journal:  Mol Cell Proteomics       Date:  2014-04-15       Impact factor: 5.911

9.  Impact of Specimen Heterogeneity on Biomarkers in Repository Samples from Patients with Acute Myeloid Leukemia: A SWOG Report.

Authors:  Era L Pogosova-Agadjanyan; Anna Moseley; Megan Othus; Frederick R Appelbaum; Thomas R Chauncey; I-Ming L Chen; Harry P Erba; John E Godwin; Min Fang; Kenneth J Kopecky; Alan F List; Galina L Pogosov; Jerald P Radich; Cheryl L Willman; Brent L Wood; Soheil Meshinchi; Derek L Stirewalt
Journal:  Biopreserv Biobank       Date:  2017-11-27       Impact factor: 2.256

10.  Phenotype-Driven Plasma Biobanking Strategies and Methods.

Authors:  Erica A Bowton; Sarah P Collier; Xiaoming Wang; Cara B Sutcliffe; Sara L Van Driest; Lindsay J Couch; Miguel Herrera; Rebecca N Jerome; Robbert J C Slebos; William E Alborn; Daniel C Liebler; Candace D McNaughton; Ray L Mernaugh; Quinn S Wells; Nancy J Brown; Dan M Roden; Jill M Pulley
Journal:  J Pers Med       Date:  2015-05-14
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