Literature DB >> 33589781

Harnessing non-destructive 3D pathology.

Jonathan T C Liu1,2,3, Adam K Glaser4, Kaustav Bera5, Lawrence D True6, Nicholas P Reder4,6, Kevin W Eliceiri7,8,9, Anant Madabhushi10,11.   

Abstract

High-throughput methods for slide-free three-dimensional (3D) pathological analyses of whole biopsies and surgical specimens offer the promise of modernizing traditional histology workflows and delivering improvements in diagnostic performance. Advanced optical methods now enable the interrogation of orders of magnitude more tissue than previously possible, where volumetric imaging allows for enhanced quantitative analyses of cell distributions and tissue structures that are prognostic and predictive. Non-destructive imaging processes can simplify laboratory workflows, potentially reducing costs, and can ensure that samples are available for subsequent molecular assays. However, the large size of the feature-rich datasets that they generate poses challenges for data management and computer-aided analysis. In this Perspective, we provide an overview of the imaging technologies that enable 3D pathology, and the computational tools-machine learning, in particular-for image processing and interpretation. We also discuss the integration of various other diagnostic modalities with 3D pathology, along with the challenges and opportunities for clinical adoption and regulatory approval.

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Mesh:

Year:  2021        PMID: 33589781      PMCID: PMC8118147          DOI: 10.1038/s41551-020-00681-x

Source DB:  PubMed          Journal:  Nat Biomed Eng        ISSN: 2157-846X            Impact factor:   25.671


  207 in total

Review 1.  Overdiagnosis in cancer.

Authors:  H Gilbert Welch; William C Black
Journal:  J Natl Cancer Inst       Date:  2010-04-22       Impact factor: 13.506

2.  NCCN Guidelines Insights: Prostate Cancer Early Detection, Version 2.2016.

Authors:  Peter R Carroll; J Kellogg Parsons; Gerald Andriole; Robert R Bahnson; Erik P Castle; William J Catalona; Douglas M Dahl; John W Davis; Jonathan I Epstein; Ruth B Etzioni; Thomas Farrington; George P Hemstreet; Mark H Kawachi; Simon Kim; Paul H Lange; Kevin R Loughlin; William Lowrance; Paul Maroni; James Mohler; Todd M Morgan; Kelvin A Moses; Robert B Nadler; Michael Poch; Chuck Scales; Terrence M Shaneyfelt; Marc C Smaldone; Geoffrey Sonn; Preston Sprenkle; Andrew J Vickers; Robert Wake; Dorothy A Shead; Deborah A Freedman-Cass
Journal:  J Natl Compr Canc Netw       Date:  2016-05       Impact factor: 11.908

3.  Diagnosis of Gleason pattern 5 prostate adenocarcinoma on core needle biopsy: an interobserver reproducibility study among urologic pathologists.

Authors:  Rajal B Shah; Jianbo Li; Liang Cheng; Lars Egevad; Fang-Ming Deng; Samson W Fine; Lakshmi P Kunju; Jonathan Melamed; Rohit Mehra; Adeboye O Osunkoya; Gladell P Paner; Steve S Shen; Toyonori Tsuzuki; Kiril Trpkov; Wei Tian; Ximing J Yang; Ming Zhou
Journal:  Am J Surg Pathol       Date:  2015-09       Impact factor: 6.394

Review 4.  Targeting the PD-1/PD-L1 axis for the treatment of non-small-cell lung cancer.

Authors:  D E Meyers; P M Bryan; S Banerji; D G Morris
Journal:  Curr Oncol       Date:  2018-08-14       Impact factor: 3.677

5.  The potential impact of reproducibility of Gleason grading in men with early stage prostate cancer managed by active surveillance: a multi-institutional study.

Authors:  Jesse K McKenney; Jeff Simko; Michael Bonham; Lawrence D True; Dean Troyer; Sarah Hawley; Lisa F Newcomb; Ladan Fazli; Lakshmi P Kunju; Marlo M Nicolas; Funda Vakar-Lopez; Xiaotun Zhang; Peter R Carroll; James D Brooks
Journal:  J Urol       Date:  2011-06-15       Impact factor: 7.450

6.  Diagnostic challenges of clonal heterogeneity in prostate cancer.

Authors:  Michael C Haffner; Angelo M De Marzo; Srinivasan Yegnasubramanian; Jonathan I Epstein; H Ballentine Carter
Journal:  J Clin Oncol       Date:  2014-03-17       Impact factor: 44.544

7.  Diagnosis of "Poorly Formed Glands" Gleason Pattern 4 Prostatic Adenocarcinoma on Needle Biopsy: An Interobserver Reproducibility Study Among Urologic Pathologists With Recommendations.

Authors:  Ming Zhou; Jianbo Li; Liang Cheng; Lars Egevad; Fang-Ming Deng; Lakshmi Priya Kunju; Cristina Magi-Galluzzi; Jonathan Melamed; Rohit Mehra; Savvas Mendrinos; Adeboye O Osunkoya; Gladell Paner; Steve S Shen; Toyonori Tsuzuki; Kiril Trpkov; Wei Tian; Ximing Yang; Rajal B Shah
Journal:  Am J Surg Pathol       Date:  2015-10       Impact factor: 6.394

8.  NCCN Guidelines Insights Breast Cancer, Version 1.2016.

Authors:  William J Gradishar; Benjamin O Anderson; Ron Balassanian; Sarah L Blair; Harold J Burstein; Amy Cyr; Anthony D Elias; William B Farrar; Andres Forero; Sharon Hermes Giordano; Matthew Goetz; Lori J Goldstein; Clifford A Hudis; Steven J Isakoff; P Kelly Marcom; Ingrid A Mayer; Beryl McCormick; Meena Moran; Sameer A Patel; Lori J Pierce; Elizabeth C Reed; Kilian E Salerno; Lee S Schwartzberg; Karen Lisa Smith; Mary Lou Smith; Hatem Soliman; George Somlo; Melinda Telli; John H Ward; Dottie A Shead; Rashmi Kumar
Journal:  J Natl Compr Canc Netw       Date:  2015-12       Impact factor: 11.908

9.  Gleason grade 4 prostate adenocarcinoma patterns: an interobserver agreement study among genitourinary pathologists.

Authors:  Charlotte F Kweldam; Daan Nieboer; Ferran Algaba; Mahul B Amin; Dan M Berney; Athanase Billis; David G Bostwick; Lukas Bubendorf; Liang Cheng; Eva Compérat; Brett Delahunt; Lars Egevad; Andrew J Evans; Donna E Hansel; Peter A Humphrey; Glen Kristiansen; Theodorus H van der Kwast; Cristina Magi-Galluzzi; Rodolfo Montironi; George J Netto; Hemamali Samaratunga; John R Srigley; Puay H Tan; Murali Varma; Ming Zhou; Geert J L H van Leenders
Journal:  Histopathology       Date:  2016-05-24       Impact factor: 5.087

10.  A Contemporary Prostate Cancer Grading System: A Validated Alternative to the Gleason Score.

Authors:  Jonathan I Epstein; Michael J Zelefsky; Daniel D Sjoberg; Joel B Nelson; Lars Egevad; Cristina Magi-Galluzzi; Andrew J Vickers; Anil V Parwani; Victor E Reuter; Samson W Fine; James A Eastham; Peter Wiklund; Misop Han; Chandana A Reddy; Jay P Ciezki; Tommy Nyberg; Eric A Klein
Journal:  Eur Urol       Date:  2015-07-10       Impact factor: 20.096

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  11 in total

Review 1.  Slide Over: Advances in Slide-Free Optical Microscopy as Drivers of Diagnostic Pathology.

Authors:  Yehe Liu; Richard M Levenson; Michael W Jenkins
Journal:  Am J Pathol       Date:  2021-11-10       Impact factor: 4.307

Review 2.  The state of the art for artificial intelligence in lung digital pathology.

Authors:  Vidya Sankar Viswanathan; Paula Toro; Germán Corredor; Sanjay Mukhopadhyay; Anant Madabhushi
Journal:  J Pathol       Date:  2022-06-20       Impact factor: 9.883

3.  3D Visualization of Human Blood Vascular Networks Using Single-Domain Antibodies Directed against Endothelial Cell-Selective Adhesion Molecule (ESAM).

Authors:  Nils Rouven Hansmeier; Ina Sophie Büschlen; Rose Yinghan Behncke; Sascha Ulferts; Radjesh Bisoendial; René Hägerling
Journal:  Int J Mol Sci       Date:  2022-04-15       Impact factor: 6.208

4.  Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis.

Authors:  Weisi Xie; Nicholas P Reder; Can Koyuncu; Patrick Leo; Sarah Hawley; Hongyi Huang; Chenyi Mao; Nadia Postupna; Soyoung Kang; Robert Serafin; Gan Gao; Qinghua Han; Kevin W Bishop; Lindsey A Barner; Pingfu Fu; Jonathan L Wright; C Dirk Keene; Joshua C Vaughan; Andrew Janowczyk; Adam K Glaser; Anant Madabhushi; Lawrence D True; Jonathan T C Liu
Journal:  Cancer Res       Date:  2021-12-01       Impact factor: 13.312

5.  In vivo microscopy as an adjunctive tool to guide detection, diagnosis, and treatment.

Authors:  Kevin W Bishop; Kristen C Maitland; Milind Rajadhyaksha; Jonathan T C Liu
Journal:  J Biomed Opt       Date:  2022-04       Impact factor: 3.758

6.  A multiscale X-ray phase-contrast tomography dataset of a whole human left lung.

Authors:  R Patrick Xian; Paul Tafforeau; Claire L Walsh; Stijn E Verleden; Willi L Wagner; Alexandre Bellier; Sebastian Marussi; Maximilian Ackermann; Danny D Jonigk; Joseph Jacob; Peter D Lee
Journal:  Sci Data       Date:  2022-06-02       Impact factor: 8.501

7.  Assessment of photoacoustic tomography contrast for breast tissue imaging using 3D correlative virtual histology.

Authors:  Gurneet S Sangha; Bihe Hu; Guang Li; Sharon E Fox; Andrew B Sholl; J Quincy Brown; Craig J Goergen
Journal:  Sci Rep       Date:  2022-02-15       Impact factor: 4.996

8.  Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks.

Authors:  Ling-Hong Hung; Evan Straw; Shishir Reddy; Robert Schmitz; Zachary Colburn; Ka Yee Yeung
Journal:  Sci Rep       Date:  2022-09-02       Impact factor: 4.996

9.  Resection-inspired histopathological diagnosis of cerebral cavernous malformations using quantitative multiphoton microscopy.

Authors:  Shu Wang; Yueying Li; Yixuan Xu; Shiwei Song; Ruolan Lin; Shuoyu Xu; Xingxin Huang; Limei Zheng; Chengcong Hu; Xinquan Sun; Feng Huang; Xingfu Wang; Jianxin Chen
Journal:  Theranostics       Date:  2022-09-11       Impact factor: 11.600

Review 10.  Tissue clearing to examine tumour complexity in three dimensions.

Authors:  Jorge Almagro; Hendrik A Messal; May Zaw Thin; Jacco van Rheenen; Axel Behrens
Journal:  Nat Rev Cancer       Date:  2021-07-30       Impact factor: 60.716

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