Literature DB >> 24729665

Effect of microfibril twisting on theoretical powder diffraction patterns of cellulose Iβ

Jodi A Hadden1, Alfred D French2, Robert J Woods3.   

Abstract

Previous studies of calculated diffraction patterns for cellulose crystallites suggest that distortions that arise once models have been subjected to MD simulation are the result of both microfibril twisting and changes in unit cell dimensions induced by the empirical force field; to date, it has not been possible to separate the individual contributions of these effects. To provide a better understanding of how twisting manifests in diffraction data, the present study demonstrates a method for generating twisted and linear cellulose structures that can be compared without the bias of dimensional changes, allowing assessment of the impact of twisting alone. Analysis of unit cell dimensions, microfibril volume, hydrogen bond patterns, glycosidic torsion angles, and hydroxymethyl group orientations confirmed that the twisted and linear structures collected with this method were internally consistent, and theoretical powder diffraction patterns for the two were shown to be effectively indistinguishable. These results indicate that differences between calculated patterns for the crystal coordinates and twisted structures from MD simulation can result entirely from changes in unit cell dimensions, and not from microfibril twisting alone. Although powder diffraction patterns for models in the 81-chain size regime were shown to be unaffected by twisting, suggesting that a modest degree of twist is not inconsistent with experimental data, it may be that other diffraction techniques are capable of detecting this structural difference. Until such time as definitive experimental evidence comes to light, the results of this study suggest that both twisted and linear microfibrils may represent an appropriate model for cellulose Iβ.

Entities:  

Keywords:  Cellulose; X-ray diffraction; microfibril twist; molecular dynamics

Year:  2014        PMID: 24729665      PMCID: PMC3979627          DOI: 10.1007/s10570-013-0051-z

Source DB:  PubMed          Journal:  Cellulose (Lond)        ISSN: 0969-0239            Impact factor:   5.044


  13 in total

1.  Crystal structure and hydrogen-bonding system in cellulose Ibeta from synchrotron X-ray and neutron fiber diffraction.

Authors:  Yoshiharu Nishiyama; Paul Langan; Henri Chanzy
Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

2.  Swelling behavior of the cellulose Ibeta crystal models by molecular dynamics.

Authors:  Toshifumi Yui; Shinya Nishimura; Shingo Akiba; Sachio Hayashi
Journal:  Carbohydr Res       Date:  2006-08-17       Impact factor: 2.104

3.  Computer simulation studies of microcrystalline cellulose Ibeta.

Authors:  James F Matthews; Cathy E Skopec; Philip E Mason; Pierfrancesco Zuccato; Robert W Torget; Junji Sugiyama; Michael E Himmel; John W Brady
Journal:  Carbohydr Res       Date:  2005-11-17       Impact factor: 2.104

4.  High-temperature behavior of cellulose I.

Authors:  James F Matthews; Malin Bergenstråhle; Gregg T Beckham; Michael E Himmel; Mark R Nimlos; John W Brady; Michael F Crowley
Journal:  J Phys Chem B       Date:  2011-02-22       Impact factor: 2.991

5.  Analysis of twisting of cellulose nanofibrils in atomistic molecular dynamics simulations.

Authors:  Sami Paavilainen; Tomasz Róg; Ilpo Vattulainen
Journal:  J Phys Chem B       Date:  2011-03-22       Impact factor: 2.991

6.  The energy landscape for the interaction of the family 1 carbohydrate-binding module and the cellulose surface is altered by hydrolyzed glycosidic bonds.

Authors:  Lintao Bu; Gregg T Beckham; Michael F Crowley; Christopher H Chang; James F Matthews; Yannick J Bomble; William S Adney; Michael E Himmel; Mark R Nimlos
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

7.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

8.  REACH coarse-grained simulation of a cellulose fiber.

Authors:  Dennis C Glass; Kei Moritsugu; Xiaolin Cheng; Jeremy C Smith
Journal:  Biomacromolecules       Date:  2012-08-31       Impact factor: 6.988

9.  Unraveling cellulose microfibrils: a twisted tale.

Authors:  Jodi A Hadden; Alfred D French; Robert J Woods
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

10.  GLYCAM06: a generalizable biomolecular force field. Carbohydrates.

Authors:  Karl N Kirschner; Austin B Yongye; Sarah M Tschampel; Jorge González-Outeiriño; Charlisa R Daniels; B Lachele Foley; Robert J Woods
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

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  25 in total

Review 1.  Molecular dynamics simulations of large macromolecular complexes.

Authors:  Juan R Perilla; Boon Chong Goh; C Keith Cassidy; Bo Liu; Rafael C Bernardi; Till Rudack; Hang Yu; Zhe Wu; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2015-04-04       Impact factor: 6.809

Review 2.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

Review 3.  Cellulose Structures as a Support or Template for Inorganic Nanostructures and Their Assemblies.

Authors:  Alojz Anžlovar; Ema Žagar
Journal:  Nanomaterials (Basel)       Date:  2022-05-27       Impact factor: 5.719

4.  Isolation and Characterization Cellulose Nanosphere from Different Agricultural By-Products.

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5.  An Innovative Preparation, Characterization, and Optimization of Nanocellulose Fibers (NCF) Using Ultrasonic Waves.

Authors:  Abdullah K Alanazi
Journal:  Polymers (Basel)       Date:  2022-05-10       Impact factor: 4.967

6.  In Vitro and in Vivo Analyses of the Effects of Source, Length, and Charge on the Cytotoxicity and Immunocompatibility of Cellulose Nanocrystals.

Authors:  Adam M Weiss; Nicholas Macke; Yefei Zhang; Céline Calvino; Aaron P Esser-Kahn; Stuart J Rowan
Journal:  ACS Biomater Sci Eng       Date:  2021-03-09

7.  Comparison of paper-based nucleic acid extraction materials for point-of-care testing applications.

Authors:  Ruihua Tang; Min Li; Xueyan Yan; Mingyue Xie; Li Na Liu; Zedong Li; Feng Xu
Journal:  Cellulose (Lond)       Date:  2022-01-29       Impact factor: 6.123

8.  Influence of Sequential Liquid Ammonia and Caustic Mercerization Pre-Treatment on Dyeing Performance of Knit Cotton Fabric.

Authors:  Lina Lin; Tiancheng Jiang; Yonghong Liang; Md Nahid Pervez; Rahul Navik; Bo Gao; Yingjie Cai; Mohammad Mahbubul Hassan; Naveeta Kumari; Vincenzo Naddeo
Journal:  Materials (Basel)       Date:  2022-02-25       Impact factor: 3.623

9.  Combination of Pre- and Post-Mercerization Processes for Cotton Fabric.

Authors:  Lina Lin; Tiancheng Jiang; Yonghong Liang; Wenju Zhu; Umarsharif Y Inamdar; Md Nahid Pervez; Rahul Navik; Xiaojun Yang; Yingjie Cai; Vincenzo Naddeo
Journal:  Materials (Basel)       Date:  2022-03-11       Impact factor: 3.623

10.  Detection of Human Neutrophil Elastase by Fluorescent Peptide Sensors Conjugated to TEMPO-Oxidized Nanofibrillated Cellulose.

Authors:  Robert T Mackin; Krystal R Fontenot; Judson Vincent Edwards; Nicolette T Prevost; Jacobs H Jordan; Michael W Easson; Brian D Condon; Alfred D French
Journal:  Int J Mol Sci       Date:  2022-03-13       Impact factor: 5.923

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