Literature DB >> 19594145

The energy landscape for the interaction of the family 1 carbohydrate-binding module and the cellulose surface is altered by hydrolyzed glycosidic bonds.

Lintao Bu1, Gregg T Beckham, Michael F Crowley, Christopher H Chang, James F Matthews, Yannick J Bomble, William S Adney, Michael E Himmel, Mark R Nimlos.   

Abstract

A multiscale simulation model is used to construct potential and free energy surfaces for the carbohydrate-binding module [CBM] from an industrially important cellulase, Trichoderma reesei cellobiohydrolase I, on the hydrophobic face of a coarse-grained cellulose Ibeta polymorph. We predict from computation that the CBM alone exhibits regions of stability on the hydrophobic face of cellulose every 5 and 10 A, corresponding to a glucose unit and a cellobiose unit, respectively. In addition, we predict a new role for the CBM: specifically, that in the presence of hydrolyzed cellulose chain ends, the CBM exerts a thermodynamic driving force to translate away from the free cellulose chain ends. This suggests that the CBM is not only required for binding to cellulose, as has been known for two decades, but also that it has evolved to both assist the enzyme in recognizing a cellulose chain end and exert a driving force on the enzyme during processive hydrolysis of cellulose.

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Year:  2009        PMID: 19594145     DOI: 10.1021/jp904003z

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  19 in total

1.  Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module.

Authors:  Courtney B Taylor; M Faiz Talib; Clare McCabe; Lintao Bu; William S Adney; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2011-12-06       Impact factor: 5.157

2.  The impact of Trichoderma reesei Cel7A carbohydrate binding domain mutations on its binding to a cellulose surface: a molecular dynamics free energy study.

Authors:  Tong Li; Shihai Yan; Lishan Yao
Journal:  J Mol Model       Date:  2011-07-15       Impact factor: 1.810

3.  Initial recognition of a cellodextrin chain in the cellulose-binding tunnel may affect cellobiohydrolase directional specificity.

Authors:  Pavan K Ghattyvenkatakrishna; Emal M Alekozai; Gregg T Beckham; Roland Schulz; Michael F Crowley; Edward C Uberbacher; Xiaolin Cheng
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

4.  The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein.

Authors:  Gregg T Beckham; Yannick J Bomble; James F Matthews; Courtney B Taylor; Michael G Resch; John M Yarbrough; Steve R Decker; Lintao Bu; Xiongce Zhao; Clare McCabe; Jakob Wohlert; Malin Bergenstråhle; John W Brady; William S Adney; Michael E Himmel; Michael F Crowley
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

5.  Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium.

Authors:  Miao Wu; Gregg T Beckham; Anna M Larsson; Takuya Ishida; Seonah Kim; Christina M Payne; Michael E Himmel; Michael F Crowley; Svein J Horn; Bjørge Westereng; Kiyohiko Igarashi; Masahiro Samejima; Jerry Ståhlberg; Vincent G H Eijsink; Mats Sandgren
Journal:  J Biol Chem       Date:  2013-03-22       Impact factor: 5.157

6.  Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose.

Authors:  Akihiko Nakamura; Tomoyuki Tasaki; Daiki Ishiwata; Mayuko Yamamoto; Yasuko Okuni; Akasit Visootsat; Morice Maximilien; Hiroyuki Noji; Taku Uchiyama; Masahiro Samejima; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2016-09-08       Impact factor: 5.157

7.  Unraveling cellulose microfibrils: a twisted tale.

Authors:  Jodi A Hadden; Alfred D French; Robert J Woods
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

8.  Effect of microfibril twisting on theoretical powder diffraction patterns of cellulose Iβ

Authors:  Jodi A Hadden; Alfred D French; Robert J Woods
Journal:  Cellulose (Lond)       Date:  2014-04-01       Impact factor: 5.044

9.  Structural, biochemical, and computational characterization of the glycoside hydrolase family 7 cellobiohydrolase of the tree-killing fungus Heterobasidion irregulare.

Authors:  Majid Haddad Momeni; Christina M Payne; Henrik Hansson; Nils Egil Mikkelsen; Jesper Svedberg; Åke Engström; Mats Sandgren; Gregg T Beckham; Jerry Ståhlberg
Journal:  J Biol Chem       Date:  2013-01-09       Impact factor: 5.157

10.  Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber.

Authors:  Fernando Segato; André R L Damasio; Thiago Augusto Gonçalves; Mario T Murakami; Fabio M Squina; Mariadelourdestm Polizeli; Andrew J Mort; Rolf A Prade
Journal:  Biotechnol Biofuels       Date:  2012-04-11       Impact factor: 6.040

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