Literature DB >> 16916499

Swelling behavior of the cellulose Ibeta crystal models by molecular dynamics.

Toshifumi Yui1, Shinya Nishimura, Shingo Akiba, Sachio Hayashi.   

Abstract

The various crystal models of cellulose Ibeta, each differing in crystal size, have been studied by computer simulation using the amber molecular-dynamics package and the GLYCAM parameters. The four types of crystal model were constructed by a combination of two base-plane sizes, consisting of either 24 or 48 chains and two chain lengths having either 10 or 20 residues. The base planes of the crystal models were composed by the edges of the [1,1,0], [1,-1,0], and [1,0,0] crystal planes, where the [1,1,0] plane was assigned to the longest edge. The crystal models were soaked in water boxes to investigate their swelling behavior. Unexpectedly, the crystal models twisted quickly to form a slightly right-handed shape during the initial approximately 50 ps and that, in a steady, swollen state, the twisted forms remained for the rest of the simulation time. In spite of such overall deformation, the inner part of the swollen model fairly reproduced the important structural features of the original crystal structure, such as the rotational positions of the substituent groups and the hydrogen-bonding scheme. On heating the crystal model up to 550 K, the twisted shape was conserved in most of the temperature range, while the initial conformations of the substituent groups deviated above approximately 430 K, followed by appreciable disordering in chain sheets at higher temperatures. It is suggested that some internal tensions are involved within a chain sheet of the initial structure. In the course of swelling, some of these tensions were released to introduce a twisted shape in the crystal models.

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Year:  2006        PMID: 16916499     DOI: 10.1016/j.carres.2006.04.051

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  7 in total

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Authors:  Wesley K Lay; Mark S Miller; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2016-03-22       Impact factor: 6.006

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Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

4.  Effect of microfibril twisting on theoretical powder diffraction patterns of cellulose Iβ

Authors:  Jodi A Hadden; Alfred D French; Robert J Woods
Journal:  Cellulose (Lond)       Date:  2014-04-01       Impact factor: 5.044

5.  Preferred crystallographic orientation of cellulose in plant primary cell walls.

Authors:  Dan Ye; Sintu Rongpipi; Sarah N Kiemle; William J Barnes; Arielle M Chaves; Chenhui Zhu; Victoria A Norman; Alexander Liebman-Peláez; Alexander Hexemer; Michael F Toney; Alison W Roberts; Charles T Anderson; Daniel J Cosgrove; Esther W Gomez; Enrique D Gomez
Journal:  Nat Commun       Date:  2020-09-18       Impact factor: 14.919

6.  Irregular and suppressed elastic deformation by a structural twist in cellulose nanofibre models.

Authors:  Kojiro Uetani; Takuya Uto; Nozomu Suzuki
Journal:  Sci Rep       Date:  2021-01-12       Impact factor: 4.379

7.  Theoretical study of cellulose II nanocrystals with different exposed facets.

Authors:  Can Leng; Kenli Li; Zean Tian; Yubing Si; Huang Huang; Junfeng Li; Jie Liu; Wei-Qing Huang; Keqin Li
Journal:  Sci Rep       Date:  2021-11-08       Impact factor: 4.379

  7 in total

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