Literature DB >> 16297893

Computer simulation studies of microcrystalline cellulose Ibeta.

James F Matthews1, Cathy E Skopec, Philip E Mason, Pierfrancesco Zuccato, Robert W Torget, Junji Sugiyama, Michael E Himmel, John W Brady.   

Abstract

Molecular mechanics (MM) simulations have been used to model two small crystals of cellulose Ibeta surrounded by water. These small crystals contained six different extended surfaces: (110), (11 0), two types of (100), and two types of (010). Significant changes took place in the crystal structures. In both crystals there was an expansion of the unit cell, and a change in the gamma angle to almost orthogonal. Both microcrystals developed a right-hand twist of about 1.5 degrees per cellobiose unit, similar to the twisting of beta-sheets in proteins. In addition, in every other layer, made up of the unit cell center chains, a tilt of the sugar rings of 14.8 degrees developed relative to the crystal plane as a result of a transition of the primary alcohol groups in these layers away from the starting TG conformation to GG. In this conformation, these groups made interlayer hydrogen bonds to the origin chains above and below. No change in the primary alcohol conformations or hydrogen-bonding patterns in the origin chain layers was observed. Strong localization of the adjacent water was found for molecules in the first hydration layer of the surfaces, due to both hydrogen bonding to the hydroxyl groups of the sugar molecules and also due to hydrophobic hydration of the extensive regions of nonpolar surface resulting from the axial aliphatic hydrogen atoms of the 'tops' of the glucose monomers. Significant structuring of the water was found to extend far out into the solution. It is hypothesized that the structured layers of water might present a barrier to the approach of cellulase enzymes toward the cellulose surfaces in enzyme-catalyzed hydrolysis, and might inhibit the escape of soluble products, contributing to the slow rates of hydrolysis observed experimentally. Since the water structuring is different for the different surfaces, this might result in slower hydrolysis rates for some surfaces compared to others.

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Year:  2005        PMID: 16297893     DOI: 10.1016/j.carres.2005.09.028

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  25 in total

1.  Nanostructure of cellulose microfibrils in spruce wood.

Authors:  Anwesha N Fernandes; Lynne H Thomas; Clemens M Altaner; Philip Callow; V Trevor Forsyth; David C Apperley; Craig J Kennedy; Michael C Jarvis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

Review 2.  Solid-state NMR investigations of cellulose structure and interactions with matrix polysaccharides in plant primary cell walls.

Authors:  Tuo Wang; Mei Hong
Journal:  J Exp Bot       Date:  2015-09-09       Impact factor: 6.992

3.  Fluorescent Dye Adsorption in Aqueous Suspension to Produce Tagged Cellulose Nanofibers for Visualization on Paper.

Authors:  Emilia Purington; Douglas Bousfield; William M Gramlich
Journal:  Cellulose (Lond)       Date:  2019-04-20       Impact factor: 5.044

4.  Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum.

Authors:  Yanpin Lu; Yi-Heng Percival Zhang; Lee R Lynd
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

5.  The stability of cellulose: a statistical perspective from a coarse-grained model of hydrogen-bond networks.

Authors:  Tongye Shen; S Gnanakaran
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

6.  Unique aspects of the structure and dynamics of elementary Iβ cellulose microfibrils revealed by computational simulations.

Authors:  Daniel P Oehme; Matthew T Downton; Monika S Doblin; John Wagner; Michael J Gidley; Antony Bacic
Journal:  Plant Physiol       Date:  2015-03-18       Impact factor: 8.340

7.  Cellulose-Pectin Spatial Contacts Are Inherent to Never-Dried Arabidopsis Primary Cell Walls: Evidence from Solid-State Nuclear Magnetic Resonance.

Authors:  Tuo Wang; Yong Bum Park; Daniel J Cosgrove; Mei Hong
Journal:  Plant Physiol       Date:  2015-06-02       Impact factor: 8.340

8.  Optimizing Solute-Solute Interactions in the GLYCAM06 and CHARMM36 Carbohydrate Force Fields Using Osmotic Pressure Measurements.

Authors:  Wesley K Lay; Mark S Miller; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2016-03-22       Impact factor: 6.006

9.  Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis.

Authors:  Valdeir Arantes; Jack N Saddler
Journal:  Biotechnol Biofuels       Date:  2010-02-23       Impact factor: 6.040

10.  Unraveling cellulose microfibrils: a twisted tale.

Authors:  Jodi A Hadden; Alfred D French; Robert J Woods
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

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